EY756245

Overview
NameEY756245
Unique NameEY756245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:12..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.794e-23
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  244 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGNCATS 657
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LS VGN  +S
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSS 153          

HSP 2 Score: 38.5058 bits (88), Expect = 1.794e-23
Identity = 18/47 (38.30%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  657 VTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIENQKHMQSLMKRF 797
            +TL YIVFV L T+P++YE+YE+++      A  ++ + M+ L+ +F
Sbjct:  154 LTLLYIVFVGLETIPMLYEQYEEEL----TYAASKSGRDMKKLLNKF 196          
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.490e-22
Identity = 43/142 (30.28%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  220 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGN 645
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G+
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGS 161          

HSP 2 Score: 31.187 bits (69), Expect = 5.490e-22
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  660 TLFYIVFVLLHTVPVIYEKYEDKID 734
            TL YI  +L  T+P +Y KY+ K+D
Sbjct:  167 TLLYIGTILSVTIPALYSKYQSKVD 191          
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  247 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGN 645
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGN 134          
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  256 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGNCATS 657
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG    S
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINS 146          
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.974e-15
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  256 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGN 645
            +  +LG G  AD+ LW++K  S   L  AT  W L E +E  L+ L+C I +L + +LFLW+     F  + PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G+
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGS 130          

HSP 2 Score: 33.4982 bits (75), Expect = 2.974e-15
Identity = 14/43 (32.56%), Postives = 26/43 (60.47%), Query Frame = 3
Query:  651 NFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIENQKHMQ 779
            + +T+ YI  V   T+PV+Y ++++ IDSF  K + E    ++
Sbjct:  133 SLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLE 175          
BLAST of EY756245 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.288e-14
Identity = 34/119 (28.57%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  289 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSGVGN 645
            DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    ++K  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGN 136          

HSP 2 Score: 26.9498 bits (58), Expect = 5.288e-14
Identity = 17/47 (36.17%), Postives = 25/47 (53.19%), Query Frame = 3
Query:  645 LCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIENQKHMQSL 785
            L +F T  +I  V+  TVP ++E+Y D+I           QKH+ SL
Sbjct:  137 LLDFHTCLFIGLVMGLTVPKLWEEYGDQI-----------QKHLGSL 172          
The following BLAST results are available for this feature:
BLAST of EY756245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLN_ARATH1.794e-2335.66Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH5.490e-2230.28Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH1.010e-2036.84Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.487e-1935.82Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.974e-1532.82Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH5.288e-1428.57Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756245 ID=EY756245; Name=EY756245; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGGCTCTCTCTCGTTCTAGAGTCTAGTACATTTTTCAATTC
ATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGGAACATGCAC
CTGAGCACGAATCATCCGACAAATCACTGGTGGAGAAGATCACGGATAAG
ATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGACAAGCCGTC
GTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCGGAAGAGAAA
AACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGATATTTTCCTA
TGGAGGAACAAGAAAATATCTGCTGGTGTGCTAGGTGGAGCCACTGCAAT
GTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTTTGGTCTGCC
ATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCCAATGCATCC
ACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTACACTTCCTGA
GAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAATCAACCGAG
CCTTGGCTGTCCTGCGGGAAATTGCATCTGGAAGGGACTTGAAGAAGTTT
CTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTGGTGTCGGTAATTGTGC
AACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTACACACCGTGCC
CGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTTGGTGAGAAGG
CAACGATTGAGAATCAGAAGCATATGCAGTCTTTGATGAAAAGGTTTTGA
AGAAGGTTTTGAGTCNAATTCCAAAGGTGCATTGAAGAGGAAGATNNAAG
ACAGAATTNGTCAAGTTTTGAGAAACATGGTCT
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