EY756186 | Citrus Genome Database

Overview


Name	EY756186
Unique Name	EY756186
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	825

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.350e-14
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLK 514
            M TG         I+  E+HLGS+E IH++D L  E AT L +VF I     S IS P+G  + LS  EE  +R++LK
Sbjct:  182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259

HSP 2 Score: 43.5134 bits (101), Expect = 1.350e-14
Identity = 26/74 (35.14%), Postives = 34/74 (45.95%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YD  GR  +     +EA +KLC V+ VQ   +  P   T DGRTI Y               +TN I + IK
Sbjct:  101 LVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIK 174

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 8.879e-13
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG         I+  E H GS++ +HI+D+ GH  AT L +VF I  GT + IS P G  I L+  EE  KR + K +
Sbjct:  182 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAKVA 261

HSP 2 Score: 38.891 bits (89), Expect = 8.879e-13
Identity = 20/49 (40.82%), Postives = 26/49 (53.06%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILY 182
            L+YD  GR  +     +EA +KLC V+ V    +  P   T DGRTI Y
Sbjct:  101 LIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 149

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.879e-13
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG         I+  E H GS++ +HI+D+ GH  AT L +VF I  GT + IS P G  + L+  EE  KR + K +
Sbjct:  182 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKRIAAKVA 261

HSP 2 Score: 39.2762 bits (90), Expect = 8.879e-13
Identity = 20/49 (40.82%), Postives = 26/49 (53.06%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILY 182
            L+YD  GR  +     +EA +KLC V+ V    +  P   T DGRTI Y
Sbjct:  101 LIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRY 149

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 8.882e-13
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKT 517
            M TG         ++  E H GS++ +HI+D+ GH  A  L +VF I  G+ + +S P G  + LS  EE  KR + KT
Sbjct:  182 MITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKRLAAKT 260

HSP 2 Score: 41.2022 bits (95), Expect = 8.882e-13
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILY 182
            L+YD  GR  +     +EA +KLC V+ VQ   +  P   T DGRTI Y
Sbjct:  101 LIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRY 149

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.882e-13
Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLK 514
            M TG         ++  E H GS++  HI+D+ GH  AT + +VF I  G+ + +S P G  + LS  EE  KR + K
Sbjct:  182 MITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKRLAAK 259

HSP 2 Score: 43.1282 bits (100), Expect = 8.882e-13
Identity = 26/74 (35.14%), Postives = 33/74 (44.59%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YD  GR  +     +EA +KLC VR VQ   +  P   T DGRT+ Y                TN I + IK
Sbjct:  101 LIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIK 174

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.154e-12
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 2

Query:  275 VTMDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKT 517
            V M TG        +I   E H GS++ +H++D+ GH  AT L ++F I   T   IS P G  I LS  EE  +R   K+
Sbjct:  180 VCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRRLQAKS 260

HSP 2 Score: 40.0466 bits (92), Expect = 1.154e-12
Identity = 22/49 (44.90%), Postives = 26/49 (53.06%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILY 182
            LLYD  GR  L     +EA +KLC V+ VQ   +  P   T D RTI Y
Sbjct:  101 LLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRY 149

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.154e-12
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKT 517
            M TG         ++  E H GS++ +HI+D+ GH  AT L +VF I  G    IS P+G  + LS  EE  KR + KT
Sbjct:  182 MITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAKT 260

HSP 2 Score: 40.4318 bits (93), Expect = 1.154e-12
Identity = 20/49 (40.82%), Postives = 26/49 (53.06%), Query Frame = 3

Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILY 182
            L+YD  GR  +     +EA +KLC V+  Q   +  P   T DGRTI Y
Sbjct:  101 LVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 4.260e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261

HSP 2 Score: 41.2022 bits (95), Expect = 4.260e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3

Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 5.531e-12
Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D++G+  AT L ++F I  G    +S P G  + L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKRLAAKQS 261

HSP 2 Score: 39.2762 bits (90), Expect = 5.531e-12
Identity = 25/77 (32.47%), Postives = 32/77 (41.56%), Query Frame = 3

Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YD  GR  +     +EA +KLC VR +    +  P   T D RTI Y                T  IT+ IK
Sbjct:   98 NFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIK 174

[Close]

BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2

Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3

Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174

The following BLAST results are available for this feature:

BLAST of EY756186 vs. ExPASy Swiss-Prot

BLAST of EY756186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35


Match Name	E-value	Identity	Description
RS4A_SCHPO	1.350e-14	42.31	40S ribosomal protein S4-A OS=Schizosaccharomyces ...	[more]
RS4_BOMMO	8.879e-13	40.00	40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE...	[more]
RS4_SPOFR	8.879e-13	38.75	40S ribosomal protein S4 OS=Spodoptera frugiperda ...	[more]
RS4_CARGR	8.882e-13	36.71	40S ribosomal protein S4 OS=Carabus granulatus GN=...	[more]
RS4_LYSTE	8.882e-13	35.90	40S ribosomal protein S4 OS=Lysiphlebus testaceipe...	[more]
RS4_IXOSC	1.154e-12	37.04	40S ribosomal protein S4 OS=Ixodes scapularis GN=R...	[more]
RS4_DROME	1.154e-12	39.24	40S ribosomal protein S4 OS=Drosophila melanogaste...	[more]
RS4_CRIGR	4.260e-12	36.25	40S ribosomal protein S4 OS=Cricetulus griseus GN=...	[more]
RS4X_DANRE	5.531e-12	33.75	40S ribosomal protein S4, X isoform OS=Danio rerio...	[more]
RS4_BOVIN	5.531e-12	36.25	40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-005-F07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756186 ID=EY756186; Name=EY756186; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGCCACAGATTAACGCCAACTCCCTTCTCCTTTACGACACC
AATGGACGGATCCACCTTACTTCATTCAAGTACGATGAAGCTATATTCAA
ACTCTGCGACGTACGATCAGTGCAATTCTGGGAAGAACGGAATCCCTTAC
CCTGCACTGATGACGGGAGGACTATTCTCTACGCATACCCACTCCTCCCG
GTCCTTGATACCATCCTGCTAGACCTGCAGACTAACCTCATCACCAATCT
CATCAAGGATCATGTGCGGAAATGGTTACCATGGATACTGGTAGGAGAAA
CCGACGACGTGTCCGAATCATTATGATCTCAGAATACCATCTCGGTAGCT
ATGAGACTATCCACATCCAGGATACTCTGGGCCATGAGCTGGCAACTCTC
CTTGGACATGTGTTCACCATTAGGATGGGTACAAACTCATGAATATCTCC
TCCCGAGGGCATAGCAATTACACTATCCTTCATTGAGGAGAGCTTGAAGA
GACAATCCCTGAAGACTTCTATAGCCACCCTCTGATGATAAACTTCATGG
TCTATCCTATATGTGATTAGAAAGATGACTACATGAAATTTGTGCAATTT
GAACACTCACTGATTGCCTGCCCTACTTACGCGCCAGGAGAACATAATAT
CATAAACGCCTTCAGGCTCTATGATCGGATACATACTGAGTACGTTGAGA
GACAGGAGACTCTTCTATGTTAGCAGCCATATTGATGGAATCTGGGGCGG
CCTCGTCAGATGATCCTACTTTACCACCATTGATAGACATTTGCAGATGC
TCTATAGGTCACCGTGGCTCAATCA