EY756186

Overview
NameEY756186
Unique NameEY756186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 5.531e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.817 bits (94), Expect = 5.531e-12
Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.189e-12
Identity = 29/76 (38.16%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  287 TGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLK 514
            TG        II   E   G+ + IHI+D+ GH  AT + +VF I  G  + +S P G  I LS  EE  KR + K
Sbjct:  183 TGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258          

HSP 2 Score: 43.8986 bits (102), Expect = 7.189e-12
Identity = 27/74 (36.49%), Postives = 36/74 (48.65%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            +LYDT GR  +   +  EA FKLC V+SV+   +  P+  T DGRTI Y                T  IT+ +K
Sbjct:  100 MLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVK 173          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 9.326e-12
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D+ G+  AT L ++F I  G  + +S P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 38.5058 bits (88), Expect = 9.326e-12
Identity = 24/77 (31.17%), Postives = 32/77 (41.56%), Query Frame = 3
Query:   27 NSLLLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            N  L+YD  GR  +     +EA +KLC V+ +    +  P   T D RTI Y               +T  IT  IK
Sbjct:   98 NFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 9.326e-12
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 40.0466 bits (92), Expect = 9.326e-12
Identity = 25/74 (33.78%), Postives = 33/74 (44.59%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:  101 LVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
The following BLAST results are available for this feature:
BLAST of EY756186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS4X_RAT5.531e-1236.2540S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE5.531e-1236.2540S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU5.531e-1236.2540S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU5.531e-1236.2540S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN5.531e-1236.2540S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA5.531e-1236.2540S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE5.531e-1236.2540S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_CAEEL7.189e-1238.1640S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_ICTPU9.326e-1235.0040S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_CHICK9.326e-1236.2540S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-F07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756186 ID=EY756186; Name=EY756186; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGCCACAGATTAACGCCAACTCCCTTCTCCTTTACGACACC
AATGGACGGATCCACCTTACTTCATTCAAGTACGATGAAGCTATATTCAA
ACTCTGCGACGTACGATCAGTGCAATTCTGGGAAGAACGGAATCCCTTAC
CCTGCACTGATGACGGGAGGACTATTCTCTACGCATACCCACTCCTCCCG
GTCCTTGATACCATCCTGCTAGACCTGCAGACTAACCTCATCACCAATCT
CATCAAGGATCATGTGCGGAAATGGTTACCATGGATACTGGTAGGAGAAA
CCGACGACGTGTCCGAATCATTATGATCTCAGAATACCATCTCGGTAGCT
ATGAGACTATCCACATCCAGGATACTCTGGGCCATGAGCTGGCAACTCTC
CTTGGACATGTGTTCACCATTAGGATGGGTACAAACTCATGAATATCTCC
TCCCGAGGGCATAGCAATTACACTATCCTTCATTGAGGAGAGCTTGAAGA
GACAATCCCTGAAGACTTCTATAGCCACCCTCTGATGATAAACTTCATGG
TCTATCCTATATGTGATTAGAAAGATGACTACATGAAATTTGTGCAATTT
GAACACTCACTGATTGCCTGCCCTACTTACGCGCCAGGAGAACATAATAT
CATAAACGCCTTCAGGCTCTATGATCGGATACATACTGAGTACGTTGAGA
GACAGGAGACTCTTCTATGTTAGCAGCCATATTGATGGAATCTGGGGCGG
CCTCGTCAGATGATCCTACTTTACCACCATTGATAGACATTTGCAGATGC
TCTATAGGTCACCGTGGCTCAATCA
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