EY756186

Overview
NameEY756186
Unique NameEY756186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 1.211e-11
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 39.6614 bits (91), Expect = 1.211e-11
Identity = 25/74 (33.78%), Postives = 33/74 (44.59%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y               +T  IT+ IK
Sbjct:  101 LVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 1.572e-11
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 39.2762 bits (90), Expect = 1.572e-11
Identity = 25/74 (33.78%), Postives = 32/74 (43.24%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR      +  P   T D RTI Y               +T  IT+ IK
Sbjct:  101 LVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 51.2174 bits (121), Expect = 1.572e-11
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  182 MVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS 261          

HSP 2 Score: 39.2762 bits (90), Expect = 1.572e-11
Identity = 25/74 (33.78%), Postives = 32/74 (43.24%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR      +  P   T D RTI Y               +T  IT+ IK
Sbjct:  101 LVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 3.440e-11
Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 2
Query:  281 MDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLK 514
            M TG        +I   E H GS++ +H++D  G+  AT L ++F I  G    IS P G  I L+  EE  KR + K
Sbjct:  182 MVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK 259          

HSP 2 Score: 39.2762 bits (90), Expect = 3.440e-11
Identity = 25/74 (33.78%), Postives = 32/74 (43.24%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR      +  P   T D RTI Y               +T  IT+ IK
Sbjct:  101 LVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIK 174          
BLAST of EY756186 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 7.525e-11
Identity = 28/82 (34.15%), Postives = 40/82 (48.78%), Query Frame = 2
Query:  275 VTMDTGXXXXXXXXIIMISEYHLGSYETIHIQDTLGHELATLLGHVFTIRMGTNS*ISPPEGIAITLSFIEESLKRQSLKTS 520
            V M  G        +I   E H GS++ +H++D  G+  AT + ++F I  G    IS P G  I L+  EE  KR + K S
Sbjct:  180 VCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLATKQS 261          

HSP 2 Score: 39.2762 bits (90), Expect = 7.525e-11
Identity = 25/74 (33.78%), Postives = 31/74 (41.89%), Query Frame = 3
Query:   36 LLYDTNGRIHLTSFKYDEAIFKLCDVRSVQFWEERNPLPCTDDGRTILYAYXXXXXXXXXXXXXQTNLITNLIK 257
            L+YDT GR  +     +EA +KLC VR +    +  P   T D RTI Y                T  I N IK
Sbjct:  101 LVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIK 174          
The following BLAST results are available for this feature:
BLAST of EY756186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS4Y1_MONDO1.211e-1136.2540S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4_XENTR1.572e-1136.2540S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA1.572e-1136.2540S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4X_MONDO3.440e-1135.9040S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y1_PONPY7.525e-1134.1540S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-F07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756186 ID=EY756186; Name=EY756186; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGCCACAGATTAACGCCAACTCCCTTCTCCTTTACGACACC
AATGGACGGATCCACCTTACTTCATTCAAGTACGATGAAGCTATATTCAA
ACTCTGCGACGTACGATCAGTGCAATTCTGGGAAGAACGGAATCCCTTAC
CCTGCACTGATGACGGGAGGACTATTCTCTACGCATACCCACTCCTCCCG
GTCCTTGATACCATCCTGCTAGACCTGCAGACTAACCTCATCACCAATCT
CATCAAGGATCATGTGCGGAAATGGTTACCATGGATACTGGTAGGAGAAA
CCGACGACGTGTCCGAATCATTATGATCTCAGAATACCATCTCGGTAGCT
ATGAGACTATCCACATCCAGGATACTCTGGGCCATGAGCTGGCAACTCTC
CTTGGACATGTGTTCACCATTAGGATGGGTACAAACTCATGAATATCTCC
TCCCGAGGGCATAGCAATTACACTATCCTTCATTGAGGAGAGCTTGAAGA
GACAATCCCTGAAGACTTCTATAGCCACCCTCTGATGATAAACTTCATGG
TCTATCCTATATGTGATTAGAAAGATGACTACATGAAATTTGTGCAATTT
GAACACTCACTGATTGCCTGCCCTACTTACGCGCCAGGAGAACATAATAT
CATAAACGCCTTCAGGCTCTATGATCGGATACATACTGAGTACGTTGAGA
GACAGGAGACTCTTCTATGTTAGCAGCCATATTGATGGAATCTGGGGCGG
CCTCGTCAGATGATCCTACTTTACCACCATTGATAGACATTTGCAGATGC
TCTATAGGTCACCGTGGCTCAATCA
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