EY756182

Overview
NameEY756182
Unique NameEY756182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12994 contig Csv1_Contig12994:407..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_BRUC2 (10 kDa chaperonin OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V ++   +KT  GI++P+    K   G+VVA G GARD  GK +P+ VK GD VL  ++ G EVK+G +   + ++  ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_BRUAB (10 kDa chaperonin OS=Brucella abortus GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V ++   +KT  GI++P+    K   G+VVA G GARD  GK +P+ VK GD VL  ++ G EVK+G +   + ++  ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_BRUA2 (10 kDa chaperonin OS=Brucella abortus (strain 2308) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V ++   +KT  GI++P+    K   G+VVA G GARD  GK +P+ VK GD VL  ++ G EVK+G +   + ++  ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_BRUA1 (10 kDa chaperonin OS=Brucella abortus (strain S19) GN=groS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V ++   +KT  GI++P+    K   G+VVA G GARD  GK +P+ VK GD VL  ++ G EVK+G +   + ++  ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH105_RHILO (10 kDa chaperonin 5 OS=Rhizobium loti GN=groS5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   59 MAK-RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            MAK +  P   RV+V ++   SKT  GI++P+    K   G+++AVG GARD  GK +P+ VK GD +L  ++ G EVKL  +   + ++  I+G +
Sbjct:    1 MAKSKFRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKESDIMGII 97          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   68 RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            ++ P   R+LV+++    KT  GI++P+    K   G+VVAVGPG    +G+ + + VKEGD VL  +YGG +VKL  + + +  ++ ILG +
Sbjct:    2 KIRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIM 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH103_RHILO (10 kDa chaperonin 3 OS=Rhizobium loti GN=groS3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   71 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            L P   RV+V ++   SKT  GI++P+    K   G+++AVG GARD  GK +P+ VK GD +L  ++ G EVKL  +   + ++  I+G +
Sbjct:    6 LRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKEADIMGII 97          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_PARL1 (10 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTSKLIS-GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            P   RV+V ++   SKT  GI++P+   +  S G+VVAVGPGAR  +GK + + VK GD V+  ++ G EVK+  ++  + ++  I+G L
Sbjct:    5 PLHDRVVVRRVEEESKTAGGIIIPDSAQEKPSQGEVVAVGPGARGDDGKLVALDVKVGDRVIFGKWSGTEVKIDGEELLIMKESDIMGVL 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_METSB (10 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            P   RV+V+++    KT  GI++P+    K   G+++AVGPG RD +GK  P+ VK GD VL  ++ G EVK+  +   + ++  ILG +
Sbjct:    5 PLHDRVVVKRLEGEEKTKGGIIIPDTAKEKPQEGEIIAVGPGGRDDSGKLTPLDVKAGDKVLFGKWSGTEVKIDGQDLLIMKESDILGVV 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH101_RHIME (10 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            P   RV+V ++    KT  GI++P+    K   G++VAVG GARD +GK +P+ VK GD +L  ++ G EVK+  +   + ++  I+G +
Sbjct:    8 PLHDRVVVRRVESEEKTKGGIIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVI 97          
The following BLAST results are available for this feature:
BLAST of EY756182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH10_BRUC21.339e-1140.9110 kDa chaperonin OS=Brucella canis (strain ATCC 2... [more]
CH10_BRUAB1.339e-1140.9110 kDa chaperonin OS=Brucella abortus GN=groS PE=3... [more]
CH10_BRUA21.339e-1140.9110 kDa chaperonin OS=Brucella abortus (strain 2308... [more]
CH10_BRUA11.339e-1140.9110 kDa chaperonin OS=Brucella abortus (strain S19)... [more]
CH105_RHILO1.339e-1138.1410 kDa chaperonin 5 OS=Rhizobium loti GN=groS5 PE=... [more]
CH10_DESPS1.748e-1137.6310 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH103_RHILO1.748e-1138.0410 kDa chaperonin 3 OS=Rhizobium loti GN=groS3 PE=... [more]
CH10_PARL12.284e-1138.8910 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]
CH10_METSB2.284e-1137.7810 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH101_RHIME2.284e-1136.6710 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-F01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756182 ID=EY756182; Name=EY756182; organism=Citrus sinensis; type=EST; length=619bp
CCACGCGTCCGGAAGAAAGTTTTGGTGAAGTCCCCTCCTGTTTGTTCGTG
AAGAGAAAATGGCAAAGAGATTGATTCCAGCATTCAGTCGCGTTTTGGTT
GAAAAAATAATCCCTCCTTCCAAAACCAACTCCGGAATCTTACTTCCTGA
GAAAACAAGCAAGCTGATTTCTGGAAAAGTTGTTGCTGTGGGTCCTGGAG
CTCGTGATGTCAATGGAAAGTTTATTCCTGTAAGTGTGAAGGAAGGAGAT
ACTGTTCTTTTGCCCGAGTATGGGGGGGCTGAAGTTAAGCTTGGTGATAA
AAAGTACCATCTGTACGAGGATGAGTCCATCCTGGGAACACTTCATGACC
ATTGAAAAATATTGCTCTTTGATTGCATCTAGTAATGGCAGCTTTAATAA
TTCAAAGTTGTCGGCTGGAGCAGCCTTGTGACTGAATATTAGTGCTATAT
ACATTTAAACTTATTTAGGACTTGAGAAGTGTTTTCATATAACTTGATGT
ACTAGTTCAGAAACTAATTTGCGACTGAGAATTGCTAAGAATTGCTAAGG
GCTGCAGTTTATAGCGCATTATTCGAAGTGNNCCTTGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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