EY756169

Overview
NameEY756169
Unique NameEY756169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13310 contig Csv1_Contig13310:1..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 9.603e-23
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RIS L+YEETR VLK FL++VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:   43 ARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLYGFGG 107          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.139e-22
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYE+ R VLK  L++VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.988e-21
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 193
            A  GG  RI+G +Y+ETR VLK FL+ VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLYG+
Sbjct:   55 ARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLYGY 117          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.609e-20
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 193
            A  GG  RIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLYGF
Sbjct:   44 ARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLYGF 106          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   11 GGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQG 175
            GG    +SGL+Y+ETR VLK+FL+NV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   44 GGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.534e-17
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   11 GGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQG 175
            GG    +SGL+Y+ETR VLK+FL++V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   35 GGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.343e-16
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 184
            A  GG  RI GLIYEETR V K+FL+NVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   39 ARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of EY756169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_EUPCR9.603e-2378.46Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H42_ASHGO2.139e-2278.46Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_ENTHI8.988e-2174.60Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI7.609e-2077.78Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H41_BLEJA1.435e-1878.18Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H42_BLEJA3.534e-1772.73Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN1.343e-1675.00Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756169 ID=EY756169; Name=EY756169; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAGGCTTTACGAGAATCAGCGGTCTCATCTACGAGG
AGACACGCGGCGTCCTCAAGATCTTCTTGGACAACGTCATTCGCGATGCT
GTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGCCATGGATGT
CGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTT
GATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGATTTTCCTTTTTTCCTG
TAAATCAGTGAATGTGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCA
ACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGG
TGTTTTCATCTTTGCAATGAGAATCTAGTTGTTTACTTCNNAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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