EY756169

Overview
NameEY756169
Unique NameEY756169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13310 contig Csv1_Contig13310:1..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PONAB (Histone H4 OS=Pongo abelii PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PLADU (Histone H4 OS=Platynereis dumerilii PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PIG (Histone H4 OS=Sus scrofa PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_ORENI (Histone H4 OS=Oreochromis niloticus PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_ONCMY (Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_MYTTR (Histone H4 OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_MYTGA (Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_MYTED (Histone H4 OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of EY756169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_RAT1.096e-2689.23Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]
H4_PONAB1.096e-2689.23Histone H4 OS=Pongo abelii PE=3 SV=1[more]
H4_PLADU1.096e-2689.23Histone H4 OS=Platynereis dumerilii PE=1 SV=2[more]
H4_PIG1.096e-2689.23Histone H4 OS=Sus scrofa PE=1 SV=2[more]
H4_ORENI1.096e-2689.23Histone H4 OS=Oreochromis niloticus PE=3 SV=2[more]
H4_ONCMY1.096e-2689.23Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H4_MYTTR1.096e-2689.23Histone H4 OS=Mytilus trossulus PE=3 SV=3[more]
H4_MYTGA1.096e-2689.23Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3[more]
H4_MYTED1.096e-2689.23Histone H4 OS=Mytilus edulis PE=3 SV=3[more]
H4_MYTCH1.096e-2689.23Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756169 ID=EY756169; Name=EY756169; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAGGCTTTACGAGAATCAGCGGTCTCATCTACGAGG
AGACACGCGGCGTCCTCAAGATCTTCTTGGACAACGTCATTCGCGATGCT
GTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGCCATGGATGT
CGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTT
GATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGATTTTCCTTTTTTCCTG
TAAATCAGTGAATGTGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCA
ACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGG
TGTTTTCATCTTTGCAATGAGAATCTAGTTGTTTACTTCNNAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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