EY756169

Overview
NameEY756169
Unique NameEY756169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13310 contig Csv1_Contig13310:1..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+F  NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLYGFGG 103          
The following BLAST results are available for this feature:
BLAST of EY756169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI5.440e-2687.69Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC5.440e-2687.69Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR5.440e-2687.69Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI5.440e-2687.69Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI5.440e-2687.69Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU5.440e-2687.69Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL5.440e-2687.69Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_DIAPU9.279e-2687.69Histone H4 OS=Diadromus pulchellus PE=3 SV=3[more]
H4_APLCA9.279e-2687.69Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK9.279e-2687.69Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756169 ID=EY756169; Name=EY756169; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAGGCTTTACGAGAATCAGCGGTCTCATCTACGAGG
AGACACGCGGCGTCCTCAAGATCTTCTTGGACAACGTCATTCGCGATGCT
GTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGCCATGGATGT
CGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTT
GATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGATTTTCCTTTTTTCCTG
TAAATCAGTGAATGTGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCA
ACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGG
TGTTTTCATCTTTGCAATGAGAATCTAGTTGTTTACTTCNNAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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