EY756112

Overview
NameEY756112
Unique NameEY756112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:328..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756112 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 54/170 (31.76%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   16 KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 504
            +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T                K  E+ + RLAM+A L F  +    GK P
Sbjct:   84 EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT-------------QEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 230          
BLAST of EY756112 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 59/178 (33.15%), Postives = 76/178 (42.70%), Query Frame = 1
Query:   19 DPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 486
            DP      R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R                       N  +  GE    YPGG++FDPL LA          D      LKV EIK+ RLAM +M  F+ +A
Sbjct:   88 DPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR----------------------INGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234          
The following BLAST results are available for this feature:
BLAST of EY756112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CB24_ARATH1.548e-1231.76Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_HORVU3.812e-1133.15Chlorophyll a-b binding protein of LHCII type III,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756112 ID=EY756112; Name=EY756112; organism=Citrus sinensis; type=EST; length=612bp
CCACGCGTCCGTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGC
AGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCG
TCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCT
GGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCT
CCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTG
AATCTCAATCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAAC
TTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGA
TCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGACA
CTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTT
GCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGAC
GCCACTTGGGGCTCTTGGTTTGTAAAACATGCTTATGTAGATAACTCACT
GATTGGTGTTAAGCGTAATCAATCGGATGTATATGAGTTCCCTCAAAAAA
AAAAAAAAAAAA
back to top