EY756106

Overview
NameEY756106
Unique NameEY756106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756106_ssr97 microsatellite EY756106_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1026 contig Csv1_Contig1026:44..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+ +GLI++VS H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNT 112          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.396e-19
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A+ EL+++G+I++VS H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNT 112          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN VLFD+ATY+KL  E P YKLITPS++S+RL+I GSLA++A+ EL  +GLI+ V  H SQ IYTRAT
Sbjct:   43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRAT 112          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN VLFD+ TY+KL  E P+YKLITP+++S+RL++ GSLAR+A+ EL  +GLI+ V  H  Q IYTRAT
Sbjct:   43 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 112          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_CAEEL (40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NNMVLFDQATYDKL  E   YKLITPS++S+RL++  SLA+  ++EL A+GL++ V  H  Q +YTRAT
Sbjct:   40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRAT 109          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_LEIIN (40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTR 341
            + N V+FD+ TYDKL SE PKYKLITPSI+SDRL+I  S+A   +++L    LIR+VS  +  ++YTR
Sbjct:   36 LQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_DICDI (40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 344
            +NN +LFD+ TY KLL E P  K+IT +++S+R++ NGSLAR+AI+EL+++GLI+ +       +YT+A
Sbjct:   41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  150 VLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            V+ DQ  YD++L E P Y+ ++ S+L DRL+I GSLAR A+R L   G+I+ +S H+ Q IYTRAT
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105          
The following BLAST results are available for this feature:
BLAST of EY756106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_HUMAN6.305e-2062.8640S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN6.305e-2062.8640S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_DANRE8.234e-2062.8640S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU2.396e-1961.4340S ribosomal protein S25 OS=Ictalurus punctatus G... [more]
RS25_DROME2.028e-1862.8640S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_SPOFR1.717e-1758.5740S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_CAEEL1.717e-1758.5740S ribosomal protein S25 OS=Caenorhabditis elegan... [more]
RS25_LEIIN3.958e-1454.4140S ribosomal protein S25 OS=Leishmania infantum G... [more]
RS25_DICDI3.351e-1347.8340S ribosomal protein S25 OS=Dictyostelium discoid... [more]
RS25A_YEAST4.376e-1351.5240S ribosomal protein S25-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756106 ID=EY756106; Name=EY756106; organism=Citrus sinensis; type=EST; length=498bp
TTTCGATCGACCCACGCGTCCGAGATCCAATTGCTCCAAAGAAGGACAAG
GCTCCCCCTCCATCCTCAAAGCCTGCGAAATCCGGAGGCGGCAAGCAGAA
GAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAAGTGAACAACATGG
TGTTGTTTGATCAGGCAACCTATGACAAGCTCCTGTCCGAGGCTCCTAAG
TACAAGCTTATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTAATGG
ATCGCTTGCAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTGATCA
GGATGGTGTCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAACCAAC
ACCTAAGTCTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTCGTTC
TGCCGTGTTTTGACTGCTATTATTTTTGTTTCTTGTGAATCTATTTGAGA
GTGTACAAGTATAATTTAGAGTTTTATTTACATTTCTTGTTTGATGAA
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