EY756103

Overview
NameEY756103
Unique NameEY756103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length297
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13304 contig Csv1_Contig13304:1..299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756103 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.943e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:    3 RRPTRPRYLTREKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 155
            R+     YLT EK  SPGEE +KVF A+ +G+IIDPLLECL+ W+G+PLPI
Sbjct:  665 RKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPI 715          
BLAST of EY756103 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 3
Query:   27 LTREKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 155
            LT EK  SPGEE D+VF A+C+GK++DPLL CL+ W+G+PLPI
Sbjct:  662 LTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGAPLPI 704          
BLAST of EY756103 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.438e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 3
Query:    3 RRPTRPRYLTREKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 155
            R     R LT E   SPGE+ DKVF AI QGK+IDPL ECLKEW+G+P+ I
Sbjct:  643 RNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGAPISI 693          
BLAST of EY756103 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 3
Query:   27 LTREKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 155
            LT EK  SPGEE DKVFTAIC GK+IDP    LKEW+G+PLP+
Sbjct:  528 LTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGAPLPL 570          
The following BLAST results are available for this feature:
BLAST of EY756103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PAL1_PETCR8.943e-1260.78Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PAL2_LITER1.992e-1165.12Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL3_ARATH4.438e-1160.78Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL4_POPKI7.571e-1169.77Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-F05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756103 ID=EY756103; Name=EY756103; organism=Citrus sinensis; type=EST; length=297bp
TTCGTCGACCCACGCGTCCGCGGTATCTGACACGAGAGAAGGCGATATCA
CCAGGCGAGGAATGTGATAAGGTGTTTACAGCGATTTGTCAGGGAAAAAT
AATTGATCCACTGCTTGAATGTCTTAAAGAATGGGATGGGAGTCCTCTTC
CAATTTGTTAATGCTTTCTTTTATGCCTTTTTTTTTATATATATTTTAAT
GTCGCTTGGAAGGTTAACAAATATAATTCTTCTACTGTGAGGATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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