EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.852e-12
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            YSKRAFVHWYVGEGMEEGEFSEARE LAALE DY
Sbjct:  399 YSKRAFVHWYVGEGMEEGEFSEAREVLAALEADY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.852e-12
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            +SKRAFVHWYVGEGMEEGEFSEAREDLA LE DY
Sbjct:  395 FSKRAFVHWYVGEGMEEGEFSEAREDLAMLEDDY 428          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.852e-12
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLA LEK Y
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAXLEKXY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 111
            Y+K AFVHWYVGEGMEEGEFSEAREDLAALEKD
Sbjct:  399 YAKWAFVHWYVGEGMEEGEFSEAREDLAALEKD 431          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEE +FSEAREDLA LEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEERQFSEAREDLATLEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            + KRAFVHWYVGEGMEEGEF+EAR+DL ALEKDY
Sbjct:  408 FVKRAFVHWYVGEGMEEGEFAEARDDLLALEKDY 441          
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA_SORMA8.852e-1294.12Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ENCCU8.852e-1291.18Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA_AVESA8.852e-1291.18Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA3E_HUMAN1.972e-1193.94Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA2_HOMAM1.972e-1188.24Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA_DICDI4.393e-1185.29Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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