EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  274 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA3_RAT3.594e-1397.06Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE3.594e-1397.06Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_MAIZE3.594e-1397.06Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA3_HORVU3.594e-1397.06Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA3_ELEIN3.594e-1397.06Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA3_DROME3.594e-1397.06Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA3_CHICK3.594e-1397.06Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_BOVIN3.594e-1397.06Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA3_ARATH3.594e-1397.06Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA3C_HUMAN3.594e-1397.06Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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