EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  398 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 431          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            YSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            YSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            YSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  403 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 436          
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA2_STYLE3.594e-1397.06Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_SCHPO3.594e-1397.06Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA2_PELFA3.594e-1397.06Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA2_PATVU3.594e-1397.06Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA2_NEUCR3.594e-1397.06Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA2_MAIZE3.594e-1397.06Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA2_HORVU3.594e-1397.06Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA2_ELEIN3.594e-1397.06Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA2_ARATH3.594e-1397.06Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_SCHPO3.594e-1397.06Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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