EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAF+HWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  399 YAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  393 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 426
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA1_DROME3.594e-1397.06Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1_APLCA3.594e-1397.06Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA1_ANEPH3.594e-1397.06Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA13_NAEGR3.594e-1397.06Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA2_GOSHI4.694e-1394.12Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_XENTR6.130e-1394.12Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA_XENLA6.130e-1394.12Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA_TORMA6.130e-1394.12Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA_ONCKE6.130e-1394.12Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA_NOTVI6.130e-1394.12Tubulin alpha chain OS=Notophthalmus viridescens P... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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