EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA1C_MOUSE6.130e-1394.12Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_HUMAN6.130e-1394.12Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1C_CRIGR6.130e-1394.12Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]
TBA1C_BOVIN6.130e-1394.12Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA1B_RAT6.130e-1394.12Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG6.130e-1394.12Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_PANTR6.130e-1394.12Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1B_MOUSE6.130e-1394.12Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN6.130e-1394.12Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA6.130e-1394.12Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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