EY756092

Overview
NameEY756092
Unique NameEY756092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756092_ssr38 microsatellite EY756092_ssr38:38..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.067e-41
Identity = 86/145 (59.31%), Postives = 100/145 (68.97%), Query Frame = 3
Query:  186 RPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGLPAI*HLHSRLG 620
            RPT PD ARRL Y AK GYV+YRVR+ R GRKRPVP+G  YGKP +H V QLKF RS +SVA+ERAGR  G   VLNSYW+ EDSTYK+FEVIL DP H  +  +P   W+   VHKHR +RGL SA +  RGL      H  +G
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIG 146          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.638e-37
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  222 YYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGLPAI*HLHSRLG 620
            Y AK GYV+YR+R+ R GRKRPVP+G  YGKP +H V QLKF RS +SV +ERAGR  G   VLNSYW+ EDSTYK+FEVIL DP H A+  +P   W+   VHKHR +RGL SA +  RGL      H  +G
Sbjct:    2 YKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIG 134          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.926e-36
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPA 479
            +GAY +V+E+ R+KQS+V+ FL RVRCWEYRQ   I R +RP+ PD ARRL Y AK GYV+YRVR+ R  RKRP P+G  +GKP N  + QLKFQRS RS A+ER  R+ GG  +LNSYWI +  +    +  L  P+
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPS 138          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.440e-32
Identity = 72/174 (41.38%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W++ + + +  L   R  ++R+ P++VR+ RPT  D AR L Y  K G +V RVR+ R G ++P P+     KP    V ++   +S + +A+ERA RK     VLNSYW+ ED  +K++EVIL DP H A+  DP++NWLC   H+ R  RGL SA K  RGL
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.663e-32
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ PS+VR+ RPT  D AR L Y AK GY++ RVR+ R GRKRP  +G    KP+     +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA K  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 75/174 (43.10%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ P +VR+ RPT  D AR L Y AK GYVV RVR+ R GRKRP  +G    KP+   + +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA K  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.307e-31
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ P +VRV RPT  D AR L Y AK GYV+ RVR+ R GRKRP  +G    KP+   + +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA +  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.307e-31
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ P++VR+ RPT  D AR L Y AK GYV+ RVR+ R GRKRP  +G    KP+     +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA K  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_PYRKO (50S ribosomal protein L15e OS=Pyrococcus kodakaraensis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 74/174 (42.53%), Postives = 104/174 (59.77%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ P + R+ RPT  D AR L Y AK GYVV RVR+ R GRKRP  +G    KP+   + +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA K  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIQWRRDPVVKRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGKRSRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.487e-31
Identity = 73/174 (41.95%), Postives = 104/174 (59.77%), Query Frame = 3
Query:   66 VGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +G Y ++ E W+  + + +  L + R  ++R+ P +VR+ RPT  D AR L Y AK GYV+ RVR+ + GRKRP  +G    KP+     +   ++S + +A+E+A RK     VLNSYW+ ED  YK+FEVI+ DP H  +  DP+I W+    HK R  RGL SA K  RGL
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGL 172          
The following BLAST results are available for this feature:
BLAST of EY756092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK1.067e-4159.3160S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG4.638e-3757.1460S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15_QUESU3.926e-3654.3560S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_METJA3.440e-3241.3850S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_PYRHO7.663e-3242.5350S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15E_THEGJ1.001e-3143.1050S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_THEON1.307e-3142.5350S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_PYRAB1.307e-3142.5350S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]
RL15E_PYRKO2.912e-3142.5350S ribosomal protein L15e OS=Pyrococcus kodakarae... [more]
RL15E_PYRFU6.487e-3141.9550S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756092 ID=EY756092; Name=EY756092; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGATAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAG
CTCAGCTCAGAGGCAGTGGGGGCTTACACGTTCGTGTCGGAGCTATGGAG
GAAGAAACAGTCAAATGTGATGATGTTCTTGCAGAGGGTGAGGTGTTGGG
AGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCCACTCCACCT
GACTAGGCTCGACGCTTGTGTTACTATGCCAAGCTGGGTTATGTTGTTTA
TCGTGTGCGGCTATGGCGTGTTGGTCGGAAGAGGCCTGTTCCCAGGGGCA
TTGTGTATGGTAAACCCACAAACCATTGTGTTACTCAACTGAAGTTTCAA
CGCAGCAAGAGGTCTGTTGCACAGGAGCGTGCCGGTCGCAAGTTGGGAGG
TCCTACGGTTCTCAACTCTTACTGGATCAATGAGGACTCCACTTATAAGT
ACTTTGAGGTGATCTTGCCTGATCCTGCTCATAATGCCGTCCTACATGAC
CCCAGAATTAATTGGTTATGCTATGCTGTCCATAAGCACAGGGGACTCCG
TGGTCTTTACTCTGCATGTAAGAATTACAGAGGCCTACCTGCGATATGAC
ACTTGCACTCTAGGCTCGGACTTCACAAGGTCTAACTGTAATAGAACAAT
ACTTCTTTCCCTCAGGCGATACCGCCGATCACTGCTTTGGGTTGATGATT
TATCCTCNGNAGAGGGATTTGCCTGGATGACATAAAAATTTCACTCTGAC
ACTTTGGGGATTTTATTCAGGGGAGGTGTCGGATCCCCAAACTGTATTTT
TATAAAAACTTCGAGGTTCTCGGGCTCCCGGAATATCCAGCCTTAGTTCC
CAAACTGGTAAGGGCTGTGAGGATTTTTTCCTCCCGGGGGCACTTTCCCT
T
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