EY756092

Overview
NameEY756092
Unique NameEY756092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756092_ssr38 microsatellite EY756092_ssr38:38..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.465e-30
Identity = 69/173 (39.88%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   69 GAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            G Y ++++LW++     M+ L R R  ++R+ P+I+R+ +PT  D AR L Y AK G+++ RVR+ + G ++  P      +P    +      +S R +A+ERA RK     VLNSY++ ED  YK++EVIL DP H A+ +DP I W+C   H+ R  RGL SA K  RGL
Sbjct:    4 GMYHYIAQLWKRPYEGDMLTLMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPNK--GRRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGL 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_DESK1 (50S ribosomal protein L15e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.492e-30
Identity = 72/171 (42.11%), Postives = 107/171 (62.57%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +++E W++K S  +  L R R  E+R+ PS+VR+ +PT  D AR L Y AK+G+++ RVR+ + G+++P P      +P    V      +S R +A+ERA RK  G  VLNSY++ ED  YK++EVIL DP H ++ +DP +NW+C   ++ R  RGL SA K  RGL
Sbjct:    6 YHYIAEAWKEK-SRELEALIRQRLIEWRREPSVVRLEKPTRLDKARALGYKAKVGFIIVRVRVRKGGQRKPRPDS--GRRPKRMGVYGYAPAKSLRLIAEERAARKFPGLEVLNSYYVAEDGRYKWYEVILVDPHHPSICNDPDVNWICEPQNRGRVFRGLTSAGKKMRGL 173          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_AERPE (50S ribosomal protein L15e OS=Aeropyrum pernix GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.172e-30
Identity = 74/175 (42.29%), Postives = 102/175 (58.29%), Query Frame = 3
Query:   63 AVGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            A+  Y +++  W+K    +   L + R  E+R+ PSI+RV +PT  D AR L Y AK G +V RVR+ + GR++P P      +P    V      +S R +A+ERA RK     VLNSY++ ED  YK++EVIL DP H A+ +DP +NW+    HK R  RGL SA K  RGL
Sbjct:    2 ALSMYHYIAREWKKPYEGLHGELMKARLLEWRRQPSILRVEKPTRLDRARALGYKAKQGVIVARVRVRKGGRRKPRPNK--GRRPKRMGVYGFAPAKSLRLIAEERAQRKYPNLVVLNSYYVGEDGRYKWYEVILVDPNHPAIKNDPELNWVTTGKHKGRPFRGLTSAGKKMRGL 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.087e-29
Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V E W+   ++ +  LQ  R  ++R+ PS++R+ RPT  D AR L Y AK G VV RV + R G ++P P+     KP    + ++   +S + +A+ERA +K     VLNSYW+ +D   K++EVIL DP   ++ +D   NWLC   HK R  RGL SA K  RGL
Sbjct:    4 YNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.725e-29
Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V E W+   ++ +  LQ  R  ++R+ PS++RV RPT  D AR L Y AK G VV RV + R G ++P P+     KP+   + ++   +S + +A+ERA +K     VLNSYW+ +D   K++EVIL D  H ++  D   NWLC   HK R  RGL SA K  RGL
Sbjct:    4 YNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.725e-29
Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V E W+   ++ +  LQ  R  ++R+ PS++RV RPT  D AR L Y AK G VV RV + R G ++P P+     KP+   + ++   +S + +A+ERA +K     VLNSYW+ +D   K++EVIL D  H ++  D   NWLC   HK R  RGL SA K  RGL
Sbjct:    4 YNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 72/176 (40.91%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   60 EAVGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            +AV  Y +  E W++ + + +  L + R  ++R+ PS+ R+ RPT  + ARRL Y AK GYVV RVR+ + GR++  P+     +P      +    +SK+ +A+ERA RK     VLNSYW+ ED  YKY+EVI+ DP H  +  D RINW+C    K R  RG   A K  RGL
Sbjct:    2 DAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGL 175          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.936e-28
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGK-PTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y ++ E W+    + +  L R R  ++R+ P I+R+ +PT  D ARRL Y AK GYVV R+R+ R  R++   +    G+ P    V ++  ++S + +A+ER  RK     VLNSYW+ ED   KY+EVIL DP   ++ HD +INW+C   H  R  RGL SA K  RGL
Sbjct:    7 YKYMKEAWKNPDESYVKELMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHDNKINWICSKKHTRRAFRGLTSAGKKGRGL 175          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.496e-27
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V + W+  + + +  L   R  ++R+ P I R+ RPT  D AR L Y AK GY+V R R+ R  +++   R     +PT   V ++   +S + +A+ER  RK     VLNSYW+ ED  YK++EVIL DP H A+ +DP+I W+C   H+ R  RGL S  K  RGL
Sbjct:    3 YRYVKDAWKNPKDSYVRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKT--RFKAGRRPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGL 171          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.496e-27
Identity = 66/171 (38.60%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V E W+   ++ +  LQ  R  ++R+ PS++R+ RPT  D AR L Y AK G VV RV + R G ++P P+     KP    + ++   +S + +A+ERA ++     VLNSYW+ +D   K++E+IL DP H ++ +D   +WL    HK R  RGL SA K  RGL
Sbjct:    4 YNYVKEAWKVPANSYVKELQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGL 172          
The following BLAST results are available for this feature:
BLAST of EY756092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_STAMF2.465e-3039.8850S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_DESK15.492e-3042.1150S ribosomal protein L15e OS=Desulfurococcus kamc... [more]
RL15E_AERPE7.172e-3042.2950S ribosomal protein L15e OS=Aeropyrum pernix GN=... [more]
RL15E_METM52.087e-2940.3550S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM72.725e-2940.9450S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM62.725e-2940.9450S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METKA7.930e-2940.9150S ribosomal protein L15e OS=Methanopyrus kandler... [more]
RL15E_METST3.936e-2840.7050S ribosomal protein L15e OS=Methanosphaera stadt... [more]
RL15E_METTH1.496e-2739.7750S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_METMP1.496e-2738.6050S ribosomal protein L15e OS=Methanococcus maripa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756092 ID=EY756092; Name=EY756092; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGATAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAG
CTCAGCTCAGAGGCAGTGGGGGCTTACACGTTCGTGTCGGAGCTATGGAG
GAAGAAACAGTCAAATGTGATGATGTTCTTGCAGAGGGTGAGGTGTTGGG
AGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCCACTCCACCT
GACTAGGCTCGACGCTTGTGTTACTATGCCAAGCTGGGTTATGTTGTTTA
TCGTGTGCGGCTATGGCGTGTTGGTCGGAAGAGGCCTGTTCCCAGGGGCA
TTGTGTATGGTAAACCCACAAACCATTGTGTTACTCAACTGAAGTTTCAA
CGCAGCAAGAGGTCTGTTGCACAGGAGCGTGCCGGTCGCAAGTTGGGAGG
TCCTACGGTTCTCAACTCTTACTGGATCAATGAGGACTCCACTTATAAGT
ACTTTGAGGTGATCTTGCCTGATCCTGCTCATAATGCCGTCCTACATGAC
CCCAGAATTAATTGGTTATGCTATGCTGTCCATAAGCACAGGGGACTCCG
TGGTCTTTACTCTGCATGTAAGAATTACAGAGGCCTACCTGCGATATGAC
ACTTGCACTCTAGGCTCGGACTTCACAAGGTCTAACTGTAATAGAACAAT
ACTTCTTTCCCTCAGGCGATACCGCCGATCACTGCTTTGGGTTGATGATT
TATCCTCNGNAGAGGGATTTGCCTGGATGACATAAAAATTTCACTCTGAC
ACTTTGGGGATTTTATTCAGGGGAGGTGTCGGATCCCCAAACTGTATTTT
TATAAAAACTTCGAGGTTCTCGGGCTCCCGGAATATCCAGCCTTAGTTCC
CAAACTGGTAAGGGCTGTGAGGATTTTTTCCTCCCGGGGGCACTTTCCCT
T
back to top