EY756092

Overview
NameEY756092
Unique NameEY756092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756092_ssr38 microsatellite EY756092_ssr38:38..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 TFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            T+ SE W+K        + R R  E+R+ PSIVR+ +PT  + AR L Y AK G+V+ RVR+ R G  +P P      +P    V      +  + +A+ERA RK     VL SY++ ED  YKY+E+I+ DP+H  + +DP   WL    +++R  RGL SA K  RGL
Sbjct:   12 TWNSEEWKKG-------VLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 TFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            T+ SE W+K        + R R  E+R+ PSIVR+ +PT  + AR L Y AK G+V+ RVR+ R G  +P P      +P    V      +  + +A+ERA RK     VL SY++ ED  YKY+E+I+ DP+H  + +DP   WL    +++R  RGL SA K  RGL
Sbjct:   12 TWNSEEWKKG-------VLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 TFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            T+ SE W+K        + R R  E+R+ PSIVR+ +PT  + AR L Y AK G+V+ RVR+ R G  +P P      +P    V      +  + +A+ERA RK     VL SY++ ED  YKY+E+I+ DP+H  + +DP   WL    +++R  RGL SA K  RGL
Sbjct:   12 TWNSEEWKKG-------VLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 TFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            T+ SE W+K        + R R  E+R+ PSIVR+ +PT  + AR L Y AK G+V+ RVR+ R G  +P P      +P    V      +  + +A+ERA RK     VL SY++ ED  YKY+E+I+ DP+H  + +DP   WL    +++R  RGL SA K  RGL
Sbjct:   12 TWNSEEWKKG-------VLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23
Identity = 60/172 (34.88%), Postives = 95/172 (55.23%), Query Frame = 3
Query:   72 AYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHC-VTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRG 584
            AY+++ + W+      +  L   R  E+R+ P++V++ RPT  D AR L Y AK G +V R  + R GR++        G+ + H  +  L  + S + +A+ RA RK     VLNSYW+ +D  +K++E+IL DP H ++  D  ++W+    H+ R  RGL SA K  RG
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKS---RYSRGRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRG 173          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23
Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y ++ + W+ K     +   R R  E+R+ P+I R+ RPT  + AR L Y AK G+V+ RVR+ R G  +P P      +P    V      +  R +A+ERA RK     VL SY++ ED  YKY+EVI+ D +H  +  DP + WL  +V++ R  RGL SA +  RGL
Sbjct:    6 YHYIEQTWQNKDWRRSIL--RKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHC-VTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y ++ + W+      +  L+  R   +R+  S+ RV RPT  D AR L Y AK G VV RV++ R   ++      + G+ T H    ++   +S + +++ERA RK     VLNSYW+ ED   K++EVIL DP+H  +  D  +NW+C   H  R  RG  SA +  RG+
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKS---RYIRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGM 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR-VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y+ + E W       +  LQ  R  ++R+  +I RV RPT  D AR L Y AK G VV RV + +   RK     G    +     V ++   ++ + +A+ERA RK      LNSYW+ ED + K+FE IL DP H A+ +D  +NW+C   HK+R  RG  SA +  RGL
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKAG---RRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGL 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR-VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y+ + E W       +  LQ  R  ++R+  +I RV RPT  D AR L Y AK G VV RV + +   RK     G    +     V ++   ++ + +A+ERA RK      LNSYW+ ED + K+FE IL DP H A+ +D  +NW+C   HK+R  RG  SA +  RGL
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKAG---RRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGL 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.449e-22
Identity = 65/170 (38.24%), Postives = 91/170 (53.53%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRG 584
            Y+ + E WR  +   +  LQ  R  E+R   +I R+ RPT  D AR L Y AK G VV RV + + G ++   R     +     V +L  ++S + +++ERA RK     VLNSYW+ ED + K+ EVIL DP H A+ +D  + W+    HK R  RGL SA    RG
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQ--RHKAGRRSKRQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRG 173          
The following BLAST results are available for this feature:
BLAST of EY756092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_SULIM4.978e-2339.4150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL4.978e-2339.4150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK4.978e-2339.4150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA4.978e-2339.4150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_UNCMA6.502e-2334.8850S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_SULAC6.502e-2338.0150S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_METBU6.502e-2335.4750S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_HALSA8.492e-2337.7950S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS38.492e-2337.7950S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALLT1.449e-2238.2450S ribosomal protein L15e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756092 ID=EY756092; Name=EY756092; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGATAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAG
CTCAGCTCAGAGGCAGTGGGGGCTTACACGTTCGTGTCGGAGCTATGGAG
GAAGAAACAGTCAAATGTGATGATGTTCTTGCAGAGGGTGAGGTGTTGGG
AGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCCACTCCACCT
GACTAGGCTCGACGCTTGTGTTACTATGCCAAGCTGGGTTATGTTGTTTA
TCGTGTGCGGCTATGGCGTGTTGGTCGGAAGAGGCCTGTTCCCAGGGGCA
TTGTGTATGGTAAACCCACAAACCATTGTGTTACTCAACTGAAGTTTCAA
CGCAGCAAGAGGTCTGTTGCACAGGAGCGTGCCGGTCGCAAGTTGGGAGG
TCCTACGGTTCTCAACTCTTACTGGATCAATGAGGACTCCACTTATAAGT
ACTTTGAGGTGATCTTGCCTGATCCTGCTCATAATGCCGTCCTACATGAC
CCCAGAATTAATTGGTTATGCTATGCTGTCCATAAGCACAGGGGACTCCG
TGGTCTTTACTCTGCATGTAAGAATTACAGAGGCCTACCTGCGATATGAC
ACTTGCACTCTAGGCTCGGACTTCACAAGGTCTAACTGTAATAGAACAAT
ACTTCTTTCCCTCAGGCGATACCGCCGATCACTGCTTTGGGTTGATGATT
TATCCTCNGNAGAGGGATTTGCCTGGATGACATAAAAATTTCACTCTGAC
ACTTTGGGGATTTTATTCAGGGGAGGTGTCGGATCCCCAAACTGTATTTT
TATAAAAACTTCGAGGTTCTCGGGCTCCCGGAATATCCAGCCTTAGTTCC
CAAACTGGTAAGGGCTGTGAGGATTTTTTCCTCCCGGGGGCACTTTCCCT
T
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