EY756092

Overview
NameEY756092
Unique NameEY756092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756092_ssr38 microsatellite EY756092_ssr38:38..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.892e-22
Identity = 68/176 (38.64%), Postives = 93/176 (52.84%), Query Frame = 3
Query:   63 AVGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRP-VPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            A   Y +V E W++   + +  L   R   +R+  SIVRV  PT  D AR L Y AK G VV RV++ R GR++P   RG    +     + +L   +S + +A+ERA RK      LNSYW+ ED   K+FEVIL D  H ++  D  + WL   VH+ R  RG  SA    RG+
Sbjct:    2 AKSMYAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTRG---RRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGM 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22
Identity = 63/171 (36.84%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR-VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRG 584
            Y+ + E W+  +   +  LQ  R  E+R   +I R+ RPT  D AR L Y AK G VV RV + +   RK+    G    +     V ++  +++ + +A+ER+GRK     VLNSYW+ ED + K+FEVIL DP H A+ +D  ++W+C    + R  RG  SA +  RG
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAG---RRSKRQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRG 173          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.504e-22
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 3
Query:   72 AYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            AY+F++  W  ++    +  QR+  W  R   ++ R+ +PT  D AR L Y AK G +V RV++ + G  +  P      +P    V      +S + +A+E+A RK  G  VL SY++ ED  YKY+EVIL DP +  ++ DP+ NWL    ++ R  RGL SA +  RGL
Sbjct:    5 AYSFMASTWASEEWKKTVIRQRLVEW--RNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNS--GRRPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQFNWLKNPANRGRVFRGLTSAGRRTRGL 172          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.226e-21
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPV------PRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y  + E W+  + + +  +++ R   +R  PS+VR+  PT  D AR L Y +K G++V R R+ R G  R        PR + Y K T         ++S + +A+ERA  K     VLNSY++ ED  YKY+EVIL D +H  + +DP I+W+    +  R  RGL SA    RGL
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREKIMGGRRPRRLAYNKLTR--------KKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGL 175          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 64/173 (36.99%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR--VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V + W+      +  L+  R   +R+  S+ R+ RPT  D AR L Y AK G VV RV + R  +G  RP           N     +  QR    +A+ RA RK     VLNSYW+ ED  +K+FEVIL DP H  +  D  +NW+C A  + R  RG  SA +  RG+
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNRGRRTQKMGKNKVSGGMSIQR----IAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGM 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.152e-20
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   75 YTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR--VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V + W+      +  L+  R   +R+  S+ R+ RPT  D AR L Y AK G VV RV + R  +G  RP           N     +  QR    +A+ RA R+     VLNSYW+ ED  +K+FEVIL DP H  +  D  +NW+C    + R  RG  SA +  RG+
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNRGRRTQKMGKNKVSGGMSIQR----IAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGM 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 66/177 (37.29%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   75 YTFVSELW-RKKQSNVMMFL-QRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRP----VPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            Y +V E W R  +S+V   L  R++ W  R+  S+ R+ RPT  D AR L Y AK G  V RV + R GR+        R    GK  N        QR    +A+ERA  +     VLNSYW+ +D   KY+EVIL D  H ++  D  + WL    H+ R  RG  SA +  RG+
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRYVRARRSARMGK--NSSTPGKSIQR----IAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGM 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   63 AVGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR-VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLCYAVHKHRGLRGLYSACKNYRGL 587
            A  AY+++ + W+      +  LQ  R  E+R   ++ R+ RPT  D AR   Y AK G +V RV + +   RKR    G    +     VT++  ++  + VA+ERA R      VLNSY + +D   K+ EVIL DP H A+ +D  ++W+C      R  RGL  A +  RGL
Sbjct:    2 ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG---RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGL 174          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  120 MMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWRVGRKRPVPRGIVYGKP 317
            M F+QRVRCWEYRQ PSIVR+ RPT PD ARRL Y AK G+VVYRVR+ R GRKRPVP+ +    P
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKVLCMVNP 68          
BLAST of EY756092 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 63/155 (40.65%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   63 AVGAYTFVSELWRKKQSNVMMFLQRVRCWEYRQHPSIVRVTRPTPPD*ARRLCYYAKLGYVVYRVRLWR--VGRKRPVPRGIVYGKPTNHCVTQLKFQRSKRSVAQERAGRKLGGPTVLNSYWINEDSTYKYFEVILPDPAHNAVLHDPRINWLC 521
            A  AY++++  +RK    V   L R    E+R+ P+IVRV RP   + AR+L Y AK G VV RVRL R    R+RP        +P    V  +   +S R VA+ERA RK     VLNSYW+ +D  Y+YFEVIL D     + +DP  + +C
Sbjct:    2 ARSAYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDSGR----RPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGIC 152          
The following BLAST results are available for this feature:
BLAST of EY756092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METMJ1.892e-2238.6450S ribosomal protein L15e OS=Methanoculleus maris... [more]
RL15E_NATPD2.471e-2236.8450S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_METS55.504e-2236.0550S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_THEVO1.226e-2136.1650S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_METMA6.086e-2136.9950S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_METAC5.152e-2035.8450S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_METB62.165e-1837.2950S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_HALMA2.165e-1834.6650S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15_BRANA3.692e-1868.1860S ribosomal protein L15 (Fragment) OS=Brassica n... [more]
RL15E_PYRAE6.298e-1840.6550S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756092 ID=EY756092; Name=EY756092; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGATAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAG
CTCAGCTCAGAGGCAGTGGGGGCTTACACGTTCGTGTCGGAGCTATGGAG
GAAGAAACAGTCAAATGTGATGATGTTCTTGCAGAGGGTGAGGTGTTGGG
AGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCCACTCCACCT
GACTAGGCTCGACGCTTGTGTTACTATGCCAAGCTGGGTTATGTTGTTTA
TCGTGTGCGGCTATGGCGTGTTGGTCGGAAGAGGCCTGTTCCCAGGGGCA
TTGTGTATGGTAAACCCACAAACCATTGTGTTACTCAACTGAAGTTTCAA
CGCAGCAAGAGGTCTGTTGCACAGGAGCGTGCCGGTCGCAAGTTGGGAGG
TCCTACGGTTCTCAACTCTTACTGGATCAATGAGGACTCCACTTATAAGT
ACTTTGAGGTGATCTTGCCTGATCCTGCTCATAATGCCGTCCTACATGAC
CCCAGAATTAATTGGTTATGCTATGCTGTCCATAAGCACAGGGGACTCCG
TGGTCTTTACTCTGCATGTAAGAATTACAGAGGCCTACCTGCGATATGAC
ACTTGCACTCTAGGCTCGGACTTCACAAGGTCTAACTGTAATAGAACAAT
ACTTCTTTCCCTCAGGCGATACCGCCGATCACTGCTTTGGGTTGATGATT
TATCCTCNGNAGAGGGATTTGCCTGGATGACATAAAAATTTCACTCTGAC
ACTTTGGGGATTTTATTCAGGGGAGGTGTCGGATCCCCAAACTGTATTTT
TATAAAAACTTCGAGGTTCTCGGGCTCCCGGAATATCCAGCCTTAGTTCC
CAAACTGGTAAGGGCTGTGAGGATTTTTTCCTCCCGGGGGCACTTTCCCT
T
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