EY755993

Overview
NameEY755993
Unique NameEY755993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755993 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   78 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAVHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA-LTESGKLYAFGAGDKGQLGIELVNNQ----TERGN 515
            G +  WG  ++G LG  +E    VP ++++L   K V++  G+  T  ++++G V++FG G    LGHN+ +     R    L   +VT +    +               HT A +  SG++Y+FG G  GQLG    +N+    T +GN
Sbjct:  209 GAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQ---------------HTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 344          
BLAST of EY755993 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   78 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAVHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA-LTESGKLYAFGAGDKGQLGIELVNNQ----TERGN 515
            G +  WG  ++G LG  +E    VP ++++L   K V++  G+  T  ++++G V++FG G    LGHN+ +     R    L   +VT +    +               HT A +  SG++Y+FG G  GQLG    +N+    T +GN
Sbjct:  209 GAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQVACGRQ---------------HTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 344          
The following BLAST results are available for this feature:
BLAST of EY755993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HERC4_HUMAN4.395e-1129.14Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
HERC4_MOUSE5.741e-1129.14Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755993 ID=EY755993; Name=EY755993; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGCTATTGAATCTGCAGCCAGTGGTGGTTGCAGCTGGTGCC
TGGCATGCAGCTGTTGTCGGGCAAGATGGACGTGTTTGCACATGGGGTTG
GGGGCGTTATGGATGCTTGGGTCATGGAAATGAAGAGTGTGAATCAGTTC
CTAAGGTGGTGCAAGCATTGAACGATGTGAAAGCAGTTCATGTTGCTACA
GGGGATTACACAACCTTTGTGGTCTCTGAAGATGGTGATGTATATTCATT
TGGTTGTGGTGAATCAGCTAGTCTTGGTCACAATGCTATTGCAGATGGAC
AGGGAAATAGACATGCAAATGTGTTGACTCCACAGCTAGTAACATCATTG
AAGCAAGTCAACGAGCGGGTTGTACAGATCAGCCTGACTAATTCCATATA
TTGGAATGCCCATACTTTCGCACTCACTGAATCAGGAAAGCTATATGCAT
TTGGCGCAGGAGACAAGGGCCAGCTAGGCATAGAACTAGTTAACAATCAA
ACCGAAAGGGGAAACCCGGAGAGGGTTGACATCGATCTCAGTTAGCAATT
AAATGGCTTCACCAACCCTCATATCTGACACCGTGCCATATTGCCATTCT
GCCAATTCATCATTTAGACGACTGCATTTGGTGTTTAGATTCCTTGTTTA
TTTTGTAAATAGNACAAAGAAAGAATTGTGNAGGTTCAAAGTTTAGGCAT
AGCAGGGGCCATAGCAATGCAGGATGGTGCATGTTTGAAAATATTGTTAG
CACATAGACATAGGCCTCTAGCCGAAGCTGGTAATATAGCTGATACATTT
GGCAGGGTCATTGATATTTATTTTATGGTGAATTGCATAAAAAAAAAAAA
AAAAAAAAAAAATAGGCGGCCCTCTAAAGATTCAAGTTACTACGCTGCAT
GCG
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