EY755989

Overview
NameEY755989
Unique NameEY755989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:361..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755989 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   13 SPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGW 279
            +PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +              K    +LQT   W
Sbjct:   42 TPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSW 117          
BLAST of EY755989 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 1
Query:   13 SPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 345
            SPLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF   E                + L++A GW             G   AY LL
Sbjct:   42 SPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTEGG--------------ENLESAKGWRNFTSGFSIGAFGGASVAYVLL 138          
BLAST of EY755989 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   13 SPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYF 369
            +PLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF +                  + L+++ GW           + G   AY +L   N+ +F
Sbjct:   42 TPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQDNGVG--------------ENLESSKGWRNFTSGFTIGALGGASVAYLVLN--NISFF 144          
The following BLAST results are available for this feature:
BLAST of EY755989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSAL_THAPS6.956e-1239.33Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_EMIHU1.186e-1136.04Photosystem I reaction center subunit XI OS=Emilia... [more]
PSAL_ISOGA1.550e-1131.93Photosystem I reaction center subunit XI OS=Isochr... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-C11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755989 ID=EY755989; Name=EY755989; organism=Citrus sinensis; type=EST; length=516bp
CCACGCGTCCGCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCCA
TGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAACA
CAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGTG
ATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAGTGAAGG
AGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAGC
CTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATTC
TTCTTTGGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTACGT
TCTTAACCTTCCCTACTTCGTTAAATAGAAATATGTAACATCTACTCTTT
GGTTTTAAGATCCCATGTATCTCAATTTGCTACTCTGTAAATCTACCTGT
TTGGGATGTTTATTGCAAATGAAACTTGCTTCAGTTACTGAAAAAAAAAA
AAAAAAAAAAAAAAAA
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