EY755979

Overview
NameEY755979
Unique NameEY755979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY755979_ssr35 microsatellite EY755979_ssr35:35..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10338 contig Csv1_Contig10338:20..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.265e-20
Identity = 58/136 (42.65%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   69 MPFKRFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 470
            MPF+RFV  GR+A  + G   GRLV IVDV+DQNR LVD P   + R +     L LT  +I  P     + +  A  ++D+K +W+ S W  K     KR+SLNDFDRFKL  AK ++  L+      LKK   A
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKA 136          
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   75 FKRFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 458
            FKR+V +GRV LV  G+  G+L VIVD++D  RAL+D+P  +  R  + +  + LT I + +PR  +   +    +  DV NKW SS+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK  K
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133          
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19
Identity = 56/132 (42.42%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   69 MPFKRFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 458
            MPF+RFV  GR+A  + G   GRLV IVDV+DQNR LVD P   + R +     L LT  +I  P     + +  A   +D+K +W+ S W  K     KR+ LNDFDRFKL  AK ++  L+      LKK
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKK 132          
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 3
Query:   75 FKRFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKL 452
            F  FV IGRV ++NYG+   +  VI+DVLDQNRALV  P   + R  +NFK ++LT +K++I R  +  TLI A++ AD++ K  + S  +K+  +  +++  DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 44/125 (35.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   81 RFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPD--MVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAK 449
            R V +GRV L+  G+  G+L  IV+++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+  +++RA+L DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of EY755979 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.116e-17
Identity = 44/125 (35.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   81 RFVAIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPD--MVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAK 449
            R V +GRV L+  G+  G+L  IV+++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+  +++RA+L DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
The following BLAST results are available for this feature:
BLAST of EY755979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_DROME5.265e-2042.6560S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14_SCHPO8.981e-2040.7760S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14_DROVI7.603e-1942.4260S ribosomal protein L14 OS=Drosophila virilis GN... [more]
RL14_DICDI3.194e-1740.6360S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14B_YEAST5.449e-1735.2060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST7.116e-1735.2060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755979 ID=EY755979; Name=EY755979; organism=Citrus sinensis; type=EST; length=771bp
TTCGTAGAGGGCGCGTCCGGCTGGGTTTCACACAACACACACACCATCAC
CAACCAGAATCCCCAAAAATGCCGTTCAAGAGGTTTGTGGCGATCGGGAG
GGTCGCCCTCGTCAACTACGGCAAAGAATACGGCAGGCTCGTCGTCATCG
TAGATGTCTTAGATCAGAACAGAGCTCTAGTTGATGCCCCTGATATGGTG
AGAGGCCAAATGAACTTCAAGAGGCTTTCACTGACTGATATCAAAATTGA
CATTCCCCGTGTACCGAAGAAGAAGACATTGATTGATGCTATGGAGAAGG
CTGATGTTAAGAACAAGTGGGAAAGTAGCTCTTGGGGAAGAAAGCTGATT
GTTCAGAAGAAGAGAGCATCACTTAATGACTTTGACAGGTTCAAGCTTAT
GTTGGCCAAGATCAAGAAGGGAGGTTTGGTCAGGCAGGAGCTTGCTAAGC
TGAAGAAGGAGAATGCAGCCTAATGTTATCCGATGTGTAGCTTCCAATTT
TGTTGTGATGATGGCTAAATTTTCTTCAAGAACGTTTTACATTTATTTTT
GTGTCAGTTCTGAGATTAAGACCAATTTAAGGAGATGCTTTTTATATTAT
GATACTGTAGTCAGTGTTACCTGCAAATCCTTCTTGTCTGCAGGCTTGTT
TTACTTTTTAAGAATTTTTACCTGGATGTATTATCATCCTTGTGTTTCAT
TTGCTACTAATTTGAAAATTACGAATGGTGGGGCCAATGATTTGTCTAAA
AAAAAAAAAAAAAAAAAAAAA
back to top