EY755969

Overview
NameEY755969
Unique NameEY755969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10377 contig Csv1_Contig10377:421..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY755969 vs. ExPASy Swiss-Prot
Match: CAMT2_DICDI (Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:    4 RVRPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLDELILGWRDSVQELNKALAVDPRIEICQLSIADGVTLCRRI 336
            +++PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L++ GG+I  DN L  G  VA P+A+++  ++    +++ LN  +  D R+    L IADG+TL  +I
Sbjct:  126 KIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVEPNLV----AIRALNDKILADKRVTKSLLPIADGITLITKI 230
[Close]
BLAST of EY755969 vs. ExPASy Swiss-Prot
Match: CMTD1_HUMAN (Catechol-O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    4 RVRPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLDELILGWRDSVQELNKALAVDPRIEICQLSIADGVTLCRRI 336
            R++PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GG++     LW G V+  P  D+        + V+ LN+ +  D R+ I  L + DG+TL  +I
Sbjct:  159 RLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVA------AECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
BLAST of EY755969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CAMT2_DICDI2.779e-1336.94Probable caffeoyl-CoA O-methyltransferase 2 OS=Dic... [more]
CMTD1_HUMAN4.013e-1236.04Catechol-O-methyltransferase domain-containing pro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755969 ID=EY755969; Name=EY755969; organism=Citrus sinensis; type=EST; length=515bp
CCACGCGTCCGCCCTGCTCTTCCTCTTCTTGATCAATTGATCCAAGACGA
AAAATATCATGGGACATTCGACTTCGTCTTTGTTGATGCTGACAAGAATA
ACTACATTAATTACCACAAGAGGCTTATTGAGCTTGTGAAGGTTGGGGGA
GTGATTGGCTACGACAACACCTTGTGGGGTGGATCTGTGGTGGCACAACC
TGATGCCGACCTGGATGAGCTAATCTTAGGCTGGAGGGATTCTGTGCAGG
AACTCAACAAGGCCCTGGCCGTTGATCCAAGGATTGAGATTTGCCAGCTC
TCCATTGCTGATGGGGTTACATTATGTCGTCGCATTGGCTGATCCTCTCA
ATTTTCACTCACGAGACTGGTTGTGTCGTAACTTTTAAACTATACTATGT
GTGGTTATGACAGTAAAATCCACAAATAAATTAGACCGATGAGTGTTTGG
AGAAATGTATTATTGTTTTTCTTAAGTTAATAAATTTTTAAAAATAAAAA
AAAAAAAAAAAAAAA
back to top