EY755966

Overview
NameEY755966
Unique NameEY755966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1472 contig Csv1_Contig1472:45..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY755966 vs. ExPASy Swiss-Prot
Match: RUXE_SCHPO (Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe GN=sme1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.773e-21
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2 
Query:  107 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 349
            S +VQ++M  PIN IF+ LQ    + IWLFEQ D+R++G+I GFDE+MN+VLDDA +V  K N R+ LGRILLKGDNITL+
Sbjct:    2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKRE-LGRILLKGDNITLI 81
[Close]
BLAST of EY755966 vs. ExPASy Swiss-Prot
Match: RUXE_YEAST (Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae GN=SME1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.348e-18
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 2 
Query:  107 STKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----KKNTRK--PLGRILLKGDNITLM 349
            S KV+ + M  PIN IF FLQ +  + IWLFEQ  +RI+G+I+GFDE+MN+V+D+A E+ +     K++  K  PLG+ILLKGDNITL+
Sbjct:    2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLI 90
The following BLAST results are available for this feature:
BLAST of EY755966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RUXE_SCHPO2.773e-2160.49Small nuclear ribonucleoprotein E OS=Schizosacchar... [more]
RUXE_YEAST8.348e-1852.81Small nuclear ribonucleoprotein E OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755966 ID=EY755966; Name=EY755966; organism=Citrus sinensis; type=EST; length=515bp
CCACGCGTCCGCAAGGTCCTTACACTGAAAAGCGCTTTCGCTCCCGCTAG
GGTTTTTCGTCTCTTGAATTCTCAAGCGTATCTCTGTGAATTCGATAGCA
ATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAGCCCATTAATTTGAT
TTTCAGGTTCCTTCAAAGCAAAGCTCGCATTCAGATTTGGCTTTTTGAGC
AGAAGGATTTGAGGATTGAAGGCCGAATTATTGGTTTTGATGAGTACATG
AACTTGGTTTTGGATGATGCTGAAGAGGTTCACATAAAGAAAAATACCAG
AAAGCCATTAGGAAGGATTCTTCTCAAAGGAGACAACATAACTCTTATGA
TGAACACGGGGAAGTGATGATGGTCATTCTGGAAATCTTGTCGTCTGTCA
TTGGTTGAGCCATTTAGAGTGTATTGCTATCTTTGATGTTTGAATACTTA
ACTGGATTTCTATATGATAAGGTGATATTATATTCAGTCCATTTAAAAAA
AAAAAAAAAAAAAAA
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