EY755964

Overview
NameEY755964
Unique NameEY755964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:252..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 68/176 (38.64%), Postives = 93/176 (52.84%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 532
            + GVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:   64 KQGVLLPTRVKLLMAKGTSCYRPRRNGERKRKSVRG--AIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 71/170 (41.76%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   11 GVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKK 520
            GV +P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+                      EY KL+A R + + +R  +  +KK
Sbjct:   66 GVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRG--CIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKK 232          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    8 PGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 496
            PGVL+  RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:   66 PGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    8 PGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 496
            PGVL+  RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:   66 PGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
The following BLAST results are available for this feature:
BLAST of EY755964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASHGO2.270e-2438.6440S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI5.058e-2441.7640S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA7.304e-2340.2440S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN7.304e-2340.2440S ribosomal protein S6 OS=Leishmania infantum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755964 ID=EY755964; Name=EY755964; organism=Citrus sinensis; type=EST; length=698bp
CACGCGTCCGGGAGTGCTGTCTCCCGGCCGTGTTCGTCTTCTGCTCCACC
GTGGTACCCCTTGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGG
AGGAAGTCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAA
TTTGGTCATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATA
CAGAAAAGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAG
TTGTTCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTA
TCGTAGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGA
AAATTCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGA
ATTGCAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGA
ATACCAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCA
GTGAGAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCTTCAAAGCCA
TCTATTGCAGCTTAGATTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGT
TATGTATTGTCCTGCTGAATTCTTTTCTATAGGTTGAGGAAATTTCGAGT
GTTTTTGACTTTATATCCCATGGAATGTGATACAATAACCTTCATGGN
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