EY728719

Overview
NameEY728719
Unique NameEY728719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_AZOSE (Error-prone DNA polymerase OS=Azoarcus sp. (strain EbN1) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            RPGTA G  F+T+EDE G  NV+V  +L ERQR+ ++G+RLL V G+  + G+V HL+A RL D + LL  +  RSRDF+
Sbjct:  991 RPGTAKGTLFLTVEDETGLANVIVQAELVERQRREVLGARLLGVFGQIRSKGQVVHLLAQRLVDHSALLGALEARSRDFQ 1070          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_HAHCH (Error-prone DNA polymerase OS=Hahella chejuensis (strain KCTC 2396) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRW--EAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RP T++GVTFVTLEDE G+IN++VW+  A  Q   LV +RLL V G    +  G V H++A RLTDLTP L  +  RSRDF
Sbjct:  951 RPKTSTGVTFVTLEDETGSINILVWKKTAIAQMDILVKARLLMVYGELDKDEEGRVAHVLAHRLTDLTPHLEELESRSRDF 1031          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_AGRVS (Error-prone DNA polymerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            +PG+A GV F+T+EDE G  N+VVW  L E++R+ ++GS ++ + GR +  GEV HLIA +L DLT  LSG++ R  +F+
Sbjct:  958 KPGSAKGVMFITIEDETGPANIVVWPKLFEKRRRIVLGSSMMAIHGRIQREGEVVHLIAQQLFDLTSDLSGLADRDMEFK 1037          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNE23_AGRT5 (Error-prone DNA polymerase 3 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaE2-3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 36/80 (45.00%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            +PG+A GV F+T+EDE G  N+VVW  L E++R+A++GS ++ ++GR +  GEV HL+A +L DL+  L+G++ R  +F+
Sbjct:  958 KPGSAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQLFDLSGDLTGLADRDEEFK 1037          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_TERTT (Error-prone DNA polymerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEA--------VGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGTA G  F+TLEDE GNINVVVW+   ER R+AL+ S+LL V G  E            V H++AG+L D +  L  +++RSRDF
Sbjct:  946 RPGTAKGTLFLTLEDETGNINVVVWKSTQERYRKALLTSKLLIVKGHLERSTPTATTDATPVIHVVAGQLLDYSDRLESLALRSRDF 1032          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_IDILO (Error-prone DNA polymerase OS=Idiomarina loihiensis GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPGT SGVTF+TLEDE GN NVVVW + A + RQ  + S LL V G  E    V H+IAGRL DL+ LLS   + SR F
Sbjct:  960 RPGTRSGVTFLTLEDESGNSNVVVWANTARQFRQCFLTSNLLWVKGIVEIHDGVVHVIAGRLKDLSGLLSFTRLESRRF 1038          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_BORPA (Error-prone DNA polymerase OS=Bordetella parapertussis GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLL-----SGISVRSRDF 239
            RP TA G  FVTLEDE G IN VV  +L ERQR+ L+ + LL + G W++V  VRHL+A RL DL+ LL      G++  SR+F
Sbjct:  968 RPQTAKGTIFVTLEDETGPINAVVRPELIERQRRELLDATLLGIYGTWQSVDGVRHLVAQRLVDLSSLLGQLSQDGLAAASRNF 1051          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_BORBR (Error-prone DNA polymerase OS=Bordetella bronchiseptica GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLL-----SGISVRSRDF 239
            RP TA G  FVTLEDE G IN VV  +L ERQR+ L+ + LL + G W++V  VRHL+A RL DL+ LL      G++  SR+F
Sbjct:  968 RPQTAKGTIFVTLEDETGPINAVVRPELIERQRRELLDATLLGIYGTWQSVDGVRHLVAQRLVDLSSLLGQLSQDGLAAASRNF 1051          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNE22_RHIME (Error-prone DNA polymerase 2 OS=Rhizobium meliloti GN=dnaE2-2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            RPG+A GV F+T+EDE G  N+VVW  L ER R+ ++G+ ++ ++GR +  GEV HL+A +L DL+  LS ++ R   FR
Sbjct:  958 RPGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQLFDLSADLSSLAERDGAFR 1037          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNE22_AGRT5 (Error-prone DNA polymerase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaE2-2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            +PG+A GV F+T+EDE G  N+VVW  L E++R  ++GS ++ ++GR +  GEV HL+A +L DL+  L G++ R   FR
Sbjct:  958 KPGSAKGVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGEVVHLVAQQLFDLSADLVGLADRDTGFR 1037          
The following BLAST results are available for this feature:
BLAST of EY728719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
DNAE2_AZOSE5.014e-1551.25Error-prone DNA polymerase OS=Azoarcus sp. (strain... [more]
DNAE2_HAHCH8.552e-1554.32Error-prone DNA polymerase OS=Hahella chejuensis (... [more]
DNAE2_AGRVS1.117e-1447.50Error-prone DNA polymerase OS=Agrobacterium vitis ... [more]
DNE23_AGRT52.488e-1445.00Error-prone DNA polymerase 3 OS=Agrobacterium tume... [more]
DNAE2_TERTT2.488e-1449.43Error-prone DNA polymerase OS=Teredinibacter turne... [more]
DNAE2_IDILO3.250e-1456.96Error-prone DNA polymerase OS=Idiomarina loihiensi... [more]
DNAE2_BORPA5.543e-1451.19Error-prone DNA polymerase OS=Bordetella parapertu... [more]
DNAE2_BORBR5.543e-1451.19Error-prone DNA polymerase OS=Bordetella bronchise... [more]
DNE22_RHIME9.456e-1446.25Error-prone DNA polymerase 2 OS=Rhizobium meliloti... [more]
DNE22_AGRT59.456e-1445.00Error-prone DNA polymerase 2 OS=Agrobacterium tume... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728719 ID=EY728719; Name=EY728719; organism=Citrus sinensis; type=EST; length=658bp
AACGTCCGGGCACGGCCAGCGGCGTCACCTTCGTCACCCTGGAAGATGAG
TTCGGCAATATCAATGTGGTGGTCTGGCGCGATTTGGCCGAGCGGCAGCG
CCAGGCGCTGGTGGGCTCGCGGTTGCTCAAAGTCGATGGCCGCTGGGAGG
CGGTGGGGGAGGTTCGGCACCTGATCGCCGGGCGCCTGACCGACCTGACC
CCGCTGCTGTCGGGCATCAGTGTGCGCAGCCGGGATTTTCGCTGATCCGG
CTCTTGCTCCTTCATGGCCGCATAAGCAATATGCGATGAAACCAACCGCC
GCTGTCGGGCTCAAAGTTTTCATCGCCGCCCACCTTTTATCTTTTGCAGA
GCCGACTGATGCAGTTTTTATCCGATACCCATGGCTGTGATGGCTGGGCT
GGGGAAATGGCCCAGAGGATTCGCGCATTCGATTGGTCCGGCACCGACCT
CGGCCCGATTGGTGCCTGGCCCTCCAGCCTGGTCAGCGCCGTGCAGATGA
TGCTGGCATCGCCCTCCCTATGGTCTGCTGGNGGGAAGGGCGGGTTAATG
ATCTACACGACANTNTTCCGTGTTGCCGGGGCCGCTCTAAGATCCAGCTA
CTACGCGTGCTGCGACTCTAGTCTTATATGTCCTAATCATCCTGCTTATA
GACTCTCG
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