EY728719

Overview
NameEY728719
Unique NameEY728719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_SILPO (Error-prone DNA polymerase OS=Silicibacter pomeroyi GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGI 218
            RPGTASGV F+TLEDE G  NVVVW  + E+ R+ ++G RLL+V G  +  G V HLIA R+ DL+P L+ +
Sbjct:  986 RPGTASGVIFLTLEDETGVSNVVVWPKIYEQFRRIVMGGRLLRVTGTLQREGIVVHLIAQRIEDLSPRLADL 1057          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNE21_RHIME (Error-prone DNA polymerase 1 OS=Rhizobium meliloti GN=dnaE2-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPG+A+GV F+T+EDE G  N++VW    ++ R+ ++GSRL+KV GR +    V H++A  L D+TP+L  +   +R F
Sbjct:  984 RPGSANGVIFMTIEDETGIANIIVWEKTFQKYRRQVMGSRLVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_RHISN (Error-prone DNA polymerase OS=Rhizobium sp. (strain NGR234) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPG+A+GV F+T+EDE G  N++VW    ++ R  ++GSRL+KV GR ++   V H++A  + D+TP+L  +   +R F
Sbjct:  984 RPGSANGVIFMTIEDETGVANIIVWEKTFQKYRPQVMGSRLVKVRGRLQSESGVIHVVAEYMEDMTPMLGLLRNEARRF 1062          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_SINMW (Error-prone DNA polymerase OS=Sinorhizobium medicae (strain WSM419) GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPG+A+GV F+T+EDE G  N++VW     + R  ++GSRL+K+ GR +    V H++A  L D+TP+L  +   +R F
Sbjct:  984 RPGSANGVIFMTIEDETGIANIIVWEKTFRKYRPQVMGSRLVKIRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNAE2_RHOBA (Error-prone DNA polymerase OS=Rhodopirellula baltica GN=dnaE2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDFR 242
            RPGTA G+TFVT+EDE G++N+V++  + +R  +   GS    VDG+ E    V H+I GR+ DL+   SG+ V  RDFR
Sbjct: 1066 RPGTAKGITFVTMEDETGSMNLVLFAQVWKRFFKIARGSDAWIVDGKLENKKGVIHVIVGRVEDLSEKASGLKVPRRDFR 1145          
BLAST of EY728719 vs. ExPASy Swiss-Prot
Match: DNE21_AGRT5 (Error-prone DNA polymerase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaE2-1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 RPGTASGVTFVTLEDEFGNINVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLSGISVRSRDF 239
            RPG+A GV F+TLEDE G  N V+W    E+ R+ ++ + ++ + G+ +  GEV HL+A RLTDL+  L+ +  R+  F
Sbjct:  967 RPGSAKGVIFMTLEDETGIANAVLWVKTFEKYRRVVLSAGMVGIYGKIQREGEVVHLVAHRLTDLSHALASVGERNNAF 1045          
The following BLAST results are available for this feature:
BLAST of EY728719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
DNAE2_SILPO3.593e-1354.17Error-prone DNA polymerase OS=Silicibacter pomeroy... [more]
DNE21_RHIME1.783e-1243.04Error-prone DNA polymerase 1 OS=Rhizobium meliloti... [more]
DNAE2_RHISN5.189e-1241.77Error-prone DNA polymerase OS=Rhizobium sp. (strai... [more]
DNAE2_SINMW6.776e-1241.77Error-prone DNA polymerase OS=Sinorhizobium medica... [more]
DNAE2_RHOBA1.972e-1146.25Error-prone DNA polymerase OS=Rhodopirellula balti... [more]
DNE21_AGRT55.737e-1141.77Error-prone DNA polymerase 1 OS=Agrobacterium tume... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728719 ID=EY728719; Name=EY728719; organism=Citrus sinensis; type=EST; length=658bp
AACGTCCGGGCACGGCCAGCGGCGTCACCTTCGTCACCCTGGAAGATGAG
TTCGGCAATATCAATGTGGTGGTCTGGCGCGATTTGGCCGAGCGGCAGCG
CCAGGCGCTGGTGGGCTCGCGGTTGCTCAAAGTCGATGGCCGCTGGGAGG
CGGTGGGGGAGGTTCGGCACCTGATCGCCGGGCGCCTGACCGACCTGACC
CCGCTGCTGTCGGGCATCAGTGTGCGCAGCCGGGATTTTCGCTGATCCGG
CTCTTGCTCCTTCATGGCCGCATAAGCAATATGCGATGAAACCAACCGCC
GCTGTCGGGCTCAAAGTTTTCATCGCCGCCCACCTTTTATCTTTTGCAGA
GCCGACTGATGCAGTTTTTATCCGATACCCATGGCTGTGATGGCTGGGCT
GGGGAAATGGCCCAGAGGATTCGCGCATTCGATTGGTCCGGCACCGACCT
CGGCCCGATTGGTGCCTGGCCCTCCAGCCTGGTCAGCGCCGTGCAGATGA
TGCTGGCATCGCCCTCCCTATGGTCTGCTGGNGGGAAGGGCGGGTTAATG
ATCTACACGACANTNTTCCGTGTTGCCGGGGCCGCTCTAAGATCCAGCTA
CTACGCGTGCTGCGACTCTAGTCTTATATGTCCTAATCATCCTGCTTATA
GACTCTCG
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