EY728716

Overview
NameEY728716
Unique NameEY728716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728716_ssr48 microsatellite EY728716_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11804 contig Csv1_Contig11804:2..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_HELMI (3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.957e-15
Identity = 43/137 (31.39%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+TEKI A  + K  + PG+ +   +D+++ +DV  P S  I + E      V+D+E++V++ DH++   D ++     I+RDF  + +I + YD+ D+          G+ H  L ++G   P + ++G DSHTC
Sbjct:    3 MTITEKILAAHAGKASVEPGELIQAKLDLVLANDVTAPVS--IKELEKASLDAVFDKERVVLVQDHFVPAKDIKSAEQSKIVRDFARKHDITHHYDVGDM----------GIEHCLLPEKGLVVPGDAVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFK--KEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            M +TEKI A A+   +++PG+ +   VD+ MTHD   P +   F+     G  A+VWD E+IV++ DH +  +   A     + R+F  EQ I   +            +  G+CH  L + G  RP  V++G DSHTC
Sbjct:    4 MNMTEKILAEAAGLREVTPGEIIEARVDLAMTHDGTSPPTIRTFRDIASRGGPARVWDPERIVMVFDHNVPANTIGAAEFQRVTREFAREQGIVNIFQ-----------NAAGICHQVLPERGFVRPGMVIVGADSHTC 131          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CALS8 (3-isopropylmalate dehydratase large subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.605e-15
Identity = 42/137 (30.66%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+++KI A  + K  + PGD ++ NVD+++ +DV  P +   F+K  G + KV+D++KI I+PDH+    D ++ +   ++R+F  + +I  ++++ ++          G+ H  L ++G   P ++++G DSHTC
Sbjct:    5 MTMSQKILAYHAGKEYVEPGDLIFANVDLVLGNDVTTPVAIKEFEK-IGVD-KVFDKDKITIVPDHFTPNKDIKSAQQCKMVREFAKKYDITNYFEVGEM----------GIEHALLPEKGLVVPGDLVIGADSHTC 129          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_MOOTA (3-isopropylmalate dehydratase large subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=leuC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.124e-14
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+TEKI A  +    + PG  +   VD+ + +D+  P +   FKK  G   KV+D E++V++PDH+    D ++     ILRDF  EQ + ++++I  +          G+ H  L + G   P ++++G DSHTC
Sbjct:    3 MTITEKILAAHAGLKAVEPGQLINAKVDLALGNDITAPLAIQEFKK-LGVK-KVFDPERVVLVPDHFTPAKDIKSAEQAKILRDFAREQGLTHYFEIGRM----------GIEHCLLPEAGLVGPGDLVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_DESHY (3-isopropylmalate dehydratase large subunit OS=Desulfitobacterium hafniense (strain Y51) GN=leuC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  360 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            AMT+TEKI A  +   ++ PG  +   +D+ + +D+ GP S   F+K FG    VWD+ K+ ++PDH+    D  +      LR+F  +Q I ++++              GV H  L ++G   P +V++G DSHTC
Sbjct:    2 AMTITEKILAEHAGLDKVVPGQLITAQLDLALANDITGPVSIREFEK-FGVET-VWDKTKVALVPDHFTPNKDIASAELSKALREFAKKQGIVHYWE----------QGRVGVEHCLLPEQGVTLPGDVIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKI A  + K ++ PG+ V   +D+ M +DV  P S    +K   E  KV+D++KI ++  H++   D ++     I+RDF  + NIK+F+            + +G+ H  L + G   P ++++G DSHTC
Sbjct:    4 TITEKIIADHAGKKEVFPGELVTAKIDLAMANDVTAPLSIKTLEKYGIE--KVFDKDKIALVLSHFVPAKDIKSAEQAKIVRDFAKKHNIKWFFG-----------EGEGIEHTLLPENGIVVPGDLVVGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_AQUAE (3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus GN=leuC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 42/137 (30.66%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+TEKI A  + K ++ PG+ +   +D+ M +DV  P +  I +K +G + KV+D E+I ++  H++   D ++     I+R+F  +  IK+F++           + +G+ H  L ++G   P ++++G DSHTC
Sbjct:    3 MTITEKILAEHAGKKEVHPGELITAKIDLAMANDVTAPLAIKILEK-YGID-KVFDPERIALVLSHFVPAKDIKSAEQAKIVREFVKKHGIKWFFE-----------EGEGIEHAILPEQGLVVPGDLVVGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_ANATD (3-isopropylmalate dehydratase large subunit OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=leuC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 41/137 (29.93%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+++KI A  + K  + PGD ++ NVD+++ +DV  P +   F+K  G + +V+D++KI I+PDH+    D ++ +   ++R+F  +  I  ++++ ++          G+ H  L ++G   P ++++G DSHTC
Sbjct:    5 MTMSQKILAYHAGKEYVEPGDLIFANVDLVLGNDVTTPVAIKEFEK-IGID-RVFDKDKIAIVPDHFTPNKDIKSAQQCKMVREFAKKYEITNYFEVGEM----------GIEHALLPEKGLVVPGDLVIGADSHTC 129          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRFU (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus furiosus GN=leuC1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.270e-14
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+ EKI A  + K ++ PG+ V   VD +  +DV  P +   F+K   E  KV+D E+I I+ DH+    D +A       R+F  EQ IK+F++  ++          GV H  L + G   P E+++G DSHTC
Sbjct:    4 MTIAEKILATHAGKEEVKPGEIVLAKVDFMFGNDVTTPLAIKTFRKIGVE--KVFDPERIAIVLDHFTPNKDIKAAEQCKFSREFAREQGIKWFFEGGNV----------GVEHCLLPELGLVLPGELIIGADSHTC 128          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 41/137 (29.93%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            +TLT+KI +  + + ++ PG+ + ++VD+++ +D+  P +   F+K  G + KV+D  KI ++PDH++ + D ++   V+++R F  + NI  F+++  +          G+ H  L ++G   P +V++G DSHTC
Sbjct:    3 LTLTQKILSAKAGR-EVKPGELIEIDVDMVLGNDITAPVAIKEFEK-IGVD-KVFDNTKIALVPDHFVPSKDIKSAEQVNVMRKFAKKYNIVNFFEVGRM----------GIEHALLPEQGLVLPGDVVIGADSHTC 126          
The following BLAST results are available for this feature:
BLAST of EY728716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LEUC_HELMI2.957e-1531.393-isopropylmalate dehydratase large subunit OS=Hel... [more]
LEUC2_METTH3.862e-1533.813-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_CALS88.605e-1530.663-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC_MOOTA1.124e-1432.853-isopropylmalate dehydratase large subunit OS=Moo... [more]
LEUC_DESHY1.468e-1432.613-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_HYDS02.504e-1432.353-isopropylmalate dehydratase large subunit OS=Hyd... [more]
LEUC_AQUAE3.270e-1430.663-isopropylmalate dehydratase large subunit OS=Aqu... [more]
LEUC_ANATD3.270e-1429.933-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC1_PYRFU4.270e-1435.043-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_THETN5.577e-1429.933-isopropylmalate dehydratase large subunit OS=The... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728716 ID=EY728716; Name=EY728716; organism=Citrus sinensis; type=EST; length=905bp
CACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGCC
GCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATC
TTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGC
AAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTC
ATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACA
ATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGT
CGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCG
GTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGA
GAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCT
TGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAA
GAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTAT
ACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGG
ATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGAT
ATTAAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATG
TCATATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGNAGAGGTCTTGC
TAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCANTTTGCC
ACTGGCATTGGCACACTGATGCAGGTTTATATTGGGCCAGGGAAAGTCTG
CTCAAGGTGCCCCACTCTGAAATTGTATTGGATGTGAATGCTGATAATTG
GCTGC
back to top