EY728716

Overview
NameEY728716
Unique NameEY728716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728716_ssr48 microsatellite EY728716_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11804 contig Csv1_Contig11804:2..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOTH (3-isopropylmalate dehydratase large subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=leuC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A  +   ++SPG  +   +D+++ +D+  P +   F+K  G N KV+D  KI I+PDH+    D ++   V  +R+F  E  I  F+++  +          GV H  L ++G   P +V++G DSHTC
Sbjct:    3 MTMTQKILADHAGLDKVSPGQLIKAKLDMVLGNDITTPVAVKEFRK-IGVN-KVFDVNKIAIVPDHFTPNKDIKSAEQVKFIREFAREMGIVNFFEVGQM----------GVEHALLPEKGLVVPGDVVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOAB (3-isopropylmalate dehydratase large subunit OS=Clostridium acetobutylicum GN=leuC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 41/141 (29.08%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  351 VKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            +K  MT+T+KI A  +    +  G  +  N+D+++ +DV  P +   FK   G N KV+D++K+ I+PDH+    D ++  +  ++R F   + I+ +++I ++          G+ H  + ++G   P +V++G DSHTC
Sbjct:    1 MKKPMTMTQKILANHAGLDYVEAGQLITANLDLVLGNDVTTPVAVKAFKT-MGTN-KVFDKKKVAIVPDHFTPNKDIKSAEHCKMIRQFAKSKEIENYFEIGEM----------GIEHALIPEKGLAVPGDVIIGADSHTC 129          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_HALOH (3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 41/139 (29.50%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENA--KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+ EKI A  + + ++ PGD V   +D ++ +DV  P    +  KEF +    +V+D+++I I+PDH+    D ++      +R+F  ++ I  +++I ++          G+ H  L ++G   P E+++G DSHTC
Sbjct:    3 MTMIEKIIAAHTNRDKVKPGDIVNARIDFVLGNDVTTP----VAVKEFNKIGIDEVFDQDRIAIVPDHFTPNKDIKSAEQCKFIREFARDKGIHNYFEIGEM----------GIEHCLLPEKGLALPGEIIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 42/137 (30.66%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MTL EKI ++ + + ++ PG+ + +  DI + +D+  P +   FK+  G+  K  DR  +V++PDH+    D ++   V ++R+F  EQ I+ F++I  +          G+ H+ L +EG  +  ++++G DSHTC
Sbjct:    1 MTLAEKILSQKAGR-KVEPGEFLLLEPDIALANDITAPLAIKKFKEYGGKKVKYPDR--VVLVPDHFTPNKDIKSAMQVKMMREFAREQGIEKFFEIGRM----------GIEHVLLPEEGIVKSGDLVVGADSHTC 124          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_UNCTG (3-isopropylmalate dehydratase large subunit OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.119e-13
Identity = 45/138 (32.61%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENA--KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKI A    K  + PG+ +   +DI +++DV  P    +  KEF +    KV+D+ KI ++ DH+    D  +  +V  +R+F  E  IK++Y+  ++          GV H  L ++G   P +V++G DSHTC
Sbjct:    4 TITEKILASHCGKKVVEPGEFIEPKIDIALSNDVTAP----LAVKEFRKTGIKKVFDKNKIALVMDHFTPNKDILSAEHVKFVREFAKEHKIKHYYEGGNV----------GVEHALLPEKGIVVPGDVIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.768e-13
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+TEKI A  + +  + PG+ V V VD+ + +D+  P +    +K +G + KV D  KI ++ DH+    D  + + + I RDF  +  IK +++ +D           GV H  L ++G   P ++++G DSHTC
Sbjct:    3 MTITEKIIAAHAGRDYVEPGELVTVKVDLAIANDITAPLAIKQLEK-YGID-KVHDPNKIALVMDHFFPPKDIMSAQQIKISRDFAKKMGIKNYFEGQD----------SGVMHTLLPEKGFVVPGDLVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_THEP3 (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.615e-13
Identity = 43/137 (31.39%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            +TLT+KI + A    ++ PG+ + V+VD+++ +DV  P +   F+K  G + +V+D  KI ++PDH++   D ++   V+I+R F  +  I  F+++  +          G+ H  L ++G   P +V++G DSHTC
Sbjct:    3 LTLTQKILS-AKVGREVKPGELIEVDVDMVLGNDVTAPVAIKEFEK-IGID-RVFDNTKIALVPDHFVPNKDIKSAEQVNIMRKFAKKHGIVNFFEVGQM----------GIEHALLPEKGLVLPGDVVIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBB (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 42/137 (30.66%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++          G+ H  L ++G     +V++G DSHTC
Sbjct:    3 MTMTQKILAAHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEM----------GIEHCLLPEKGLVVAGDVVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBA (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 42/137 (30.66%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++          G+ H  L ++G     +V++G DSHTC
Sbjct:    3 MTMTQKILASHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEM----------GIEHCLLPEKGLVVAGDVVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKIF+  + K ++  G+ V V++D+++ +D+  P S   F++   E  K+   +   I+ DHYI   D  +     I R+F  + ++KYF+D KD+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    4 TITEKIFSEHAGK-KVHAGEIVRVDIDMIIGNDITTPISIRAFEESGAE--KLARPDNFSIVMDHYIPAKDIASANQAKISREFAYKHDLKYFFDEKDM----------GIEHALLPEKGLVIPGDVIIGADSHTC 126          
The following BLAST results are available for this feature:
BLAST of EY728716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LEUC_CLOTH7.284e-1432.853-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOAB7.284e-1429.083-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_HALOH9.514e-1429.503-isopropylmalate dehydratase large subunit OS=Hal... [more]
LEUC2_THEMA1.623e-1330.663-isopropylmalate dehydratase large subunit 2 OS=T... [more]
LEUC_UNCTG2.119e-1332.613-isopropylmalate dehydratase large subunit OS=Unc... [more]
LEUC_SULSY2.768e-1332.123-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_THEP33.615e-1331.393-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CLOBB4.722e-1330.663-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOBA4.722e-1330.663-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_SULNB8.054e-1332.353-isopropylmalate dehydratase large subunit OS=Sul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728716 ID=EY728716; Name=EY728716; organism=Citrus sinensis; type=EST; length=905bp
CACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGCC
GCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATC
TTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGC
AAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTC
ATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACA
ATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGT
CGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCG
GTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGA
GAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCT
TGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAA
GAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTAT
ACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGG
ATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGAT
ATTAAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATG
TCATATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGNAGAGGTCTTGC
TAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCANTTTGCC
ACTGGCATTGGCACACTGATGCAGGTTTATATTGGGCCAGGGAAAGTCTG
CTCAAGGTGCCCCACTCTGAAATTGTATTGGATGTGAATGCTGATAATTG
GCTGC
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