EY728716

Overview
NameEY728716
Unique NameEY728716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728716_ssr48 microsatellite EY728716_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11804 contig Csv1_Contig11804:2..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOPH (3-isopropylmalate dehydratase large subunit OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 38/137 (27.74%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A  +  P++  G  +  N+D+++ +D+ GP    I + +  +   V+D++KI ++PDH+    D ++  +   +R+F  E +I  +++I ++          G+ H  L ++G     E  +G DSHTC
Sbjct:    3 MTMTQKILAAHANLPEVKAGQLIEANLDLVLANDITGP--VAIHEIQRLKKKTVFDKDKIALVPDHFTPNKDIKSAEHCKCVREFAKEHDITNYFEIGEM----------GIEHALLPEKGLIVAGETCIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_THEPX (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter sp. (strain X514) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 42/137 (30.66%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            +TLT+KI + A    ++  G+ + V+VD+++ +DV  P +   F+K   E  +V+D+ KI ++PDH++   D ++   V+I+R F  +  I  F+++  +          G+ H  L ++G   P +V++G DSHTC
Sbjct:    3 LTLTQKILS-AKIGREVKAGELIEVDVDMVLGNDVTAPVAIKEFEKIGKE--EVFDKTKIALVPDHFVPNKDIKSAEQVNIMRKFAKKHGIVNFFEVGQM----------GIEHALLPEKGLVLPGDVVIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOK5 (3-isopropylmalate dehydratase large subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 40/138 (28.99%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  360 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            AMT+T+KI A  +    +  G+ + V +D+++ +D+  P +   F K  G N KV+ +EK+ I+PDH+    D ++      +R+F  +++IK +++I  +          G+ H  + ++G     +V++G DSHTC
Sbjct:    2 AMTMTQKILASHAGLDSVKSGELIKVKLDLVLGNDITTPVAINEFNK-IGSN-KVFHKEKVAIVPDHFTPNKDIKSAEQCKCVREFAKDKDIKNYFEIGQM----------GIEHALIPEKGLAVCGDVIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOB8 (3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 41/137 (29.93%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A  +    +  G  +  N+D+++ +D+  P +   FKK FG + KV+ + +I I+PDH+    D +A   V  +R+F     I+ F+++ ++          G+ H  L ++G     +V++G DSHTC
Sbjct:    3 MTMTQKILAAHAGLEAVKAGQLIEANLDLVLGNDITTPVAVNEFKK-FGTD-KVFSKSQIAIVPDHFTPNKDIKAAEQVKYIREFAQNMEIENFFEVGEM----------GIEHCLLPEKGLVVAGDVVIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+ EKI A  SE+ ++ PG+ V   +D +  +DV  P +   F+ E G   +V+DRE+I I+ DH+    D ++       R+F  E  IK+F++   +          GV H  L + G   P ++++G DSHTC
Sbjct:    3 MTIAEKILADHSEREEVKPGEIVMAKLDFVFGNDVTMPLAIKKFR-ELGVK-RVFDRERIAIVLDHFTPNKDIKSAEQCKSSREFAKEMGIKWFFEGGSV----------GVEHCLLPELGLVLPGDLIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_HERA2 (3-isopropylmalate dehydratase large subunit OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=leuC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHT 770
            T  E+I   AS +  +  GD V VNVD++M HD   P        E G   +VWDR+K+ ++ DH    +  R       +R +  +Q I + +D+            +G+ H  L +EG  +P  +++G+DSH+
Sbjct:    4 TFAEQILGHASGRSDVQAGDMVVVNVDLVMMHDSLSPSIIETLHNELGAE-RVWDRDKVAVVIDHVAPAATVRQAEQQQQVRRWVAQQGISHLFDVG-----------RGISHPVLIEEGLVQPGMLVVGSDSHS 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_NAUPA (3-isopropylmalate dehydratase large subunit OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=leuC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+TEKIFA    + ++ PG+ +  +VD+ + +D+  P S   F +   E  K+   +   I+ DH+I   D  +     I RDF  + ++K F+D KD+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    3 MTITEKIFAEHIGR-EVKPGEIIMCDVDMTIGNDITTPISIRAFNESGAE--KLAKPDNFAIVLDHFIPPKDIASANQAKINRDFAYKHDLKNFFDEKDM----------GIEHRLLPEKGLVIPGDVIIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 36/137 (26.28%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  363 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            MT+T+KI A+ ++  ++  G  +  ++D+++ +D+  P +   F+K   E+  V+D+ K+V++ DH+    D ++       R F   + +  F+D+ D+          G+ H+ L ++G     +V++G DSHTC
Sbjct:    3 MTMTQKILAKHAKLNEVKKGQLIEADLDVVLGNDITSPVAIREFEKLGIED--VYDKTKVVMVLDHFTPNKDIKSAEQCKFTRSFAKSKGVVNFFDVGDM----------GIEHVLLPEKGIVTAGDVIIGADSHTC 127          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_METB6 (3-isopropylmalate dehydratase large subunit OS=Methanoregula boonei (strain 6A8) GN=leuC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+ EKIF+R      +  G+ V   +D  M HD+ GP +   F +  G+  +V+D + ++++ DH I      A  N   +R F  EQ I + YDI +           GVCH  + ++G   P E+++G DSHTC
Sbjct:    4 TIVEKIFSRKCGS-DIKAGEVVMAPIDGAMIHDITGPLAIRKFYEMGGK--QVFDPKSVIMLFDHQIPADSLEAAENHVFMRKFAAEQGI-HNYDINE-----------GVCHQVVLEKGRAAPGEIVVGADSHTC 124          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_ARCB4 (3-isopropylmalate dehydratase large subunit OS=Arcobacter butzleri (strain RM4018) GN=leuC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKIF+  + K ++  G+ V   +D+++ +D+  P S   F++  G   K+ + +   I+ DH+I   D  +     I RDF ++ N+K F+D KD+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    4 TITEKIFSEHAGK-KVYAGEIVRSPIDMVIGNDITTPISIRAFEE--GGFEKLANPDGFAIVLDHFIPAKDIASANQAKISRDFALKHNLKNFFDEKDM----------GIEHALLPEKGLVIPGDVIIGADSHTC 126          
The following BLAST results are available for this feature:
BLAST of EY728716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LEUC_CLOPH8.054e-1327.743-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_THEPX1.052e-1230.663-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CLOK51.052e-1228.993-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOB81.052e-1229.933-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC1_PYRAB1.374e-1232.853-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_HERA21.794e-1229.633-isopropylmalate dehydratase large subunit OS=Her... [more]
LEUC_NAUPA3.997e-1232.123-isopropylmalate dehydratase large subunit OS=Nau... [more]
LEUC_CLOD61.519e-1126.283-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_METB61.984e-1132.353-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_ARCB41.984e-1131.623-isopropylmalate dehydratase large subunit OS=Arc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728716 ID=EY728716; Name=EY728716; organism=Citrus sinensis; type=EST; length=905bp
CACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGCC
GCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATC
TTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGC
AAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTC
ATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACA
ATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGT
CGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCG
GTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGA
GAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCT
TGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAA
GAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTAT
ACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGG
ATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGAT
ATTAAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATG
TCATATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGNAGAGGTCTTGC
TAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCANTTTGCC
ACTGGCATTGGCACACTGATGCAGGTTTATATTGGGCCAGGGAAAGTCTG
CTCAAGGTGCCCCACTCTGAAATTGTATTGGATGTGAATGCTGATAATTG
GCTGC
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