EY728716

Overview
NameEY728716
Unique NameEY728716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728716_ssr48 microsatellite EY728716_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11804 contig Csv1_Contig11804:2..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 41/136 (30.15%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            TLTEKIF+  + K Q+S G+ +   +D+++ +D+  P S   F++      K+ + +   I+ DH+I   D  +     I RDF  +  +K+++D +D+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    4 TLTEKIFSAHTNK-QVSAGEIIESPIDMVIGNDITTPLSIRAFEESGA--TKLANPDGFCIVMDHFIPAKDIASANQARISRDFAKKHQLKHYFDERDM----------GIEHAILPEKGLVLPGDVIIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_SULSO (3-isopropylmalate dehydratase large subunit OS=Sulfolobus solfataricus GN=leuC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 47/138 (34.06%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  357 NAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHT 770
            +A TLTEKI +RAS K  +SPGD +   VD++  HD+ G     + +K      KV+D+ K+VI  DH     D R+      +R F   + I  FYDI             G+ H  + ++ +  P +V+L  DSHT
Sbjct:    3 SAKTLTEKILSRASGK-DVSPGDVIEAKVDLVAFHDLTGYHVIEVMEK--ANMIKVFDKSKLVIAFDHLAPPPDVRSAEIQGYIRKFVKSEGIPNFYDIN-----------YGILHEVMIEQ-YANPGQVILAADSHT 125          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_NITSB (3-isopropylmalate dehydratase large subunit OS=Nitratiruptor sp. (strain SB155-2) GN=leuC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKIF+    + ++  G+ V   +D+++ +D+  P S   F+    +  K+   +   I+ DH+I   D  +     I R+F  E N+K+F+D KD+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    4 TITEKIFSEHVGR-EVKAGEIVECELDMIIGNDITTPISIKAFRDSGAK--KLAKPDNFAIVLDHFIPAKDIASANQAKISREFAYEHNLKHFFDEKDM----------GIEHALLPEKGLVVPGDVIIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC1_METAC (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina acetivorans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T++EKIF+RA+   +    D V  +VD  M HD     +   FK+   E  KVWD  +IV+  DH    ++E +      +R++  EQ I  FY++ +           G+CH  L + G   P ++++G DSH+C
Sbjct:   14 TISEKIFSRAAGT-EAKANDFVLADVDYAMAHDGTSVLAVNAFKEM--EMEKVWDPSRIVVPFDHIAPANNETSATLQREIREWVKEQGIPNFYEVGE-----------GICHQVLPENGFALPGKLVVGADSHSC 135          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CAMFF (3-isopropylmalate dehydratase large subunit OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=leuC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKIF+   +    + G  V   +D+++ +D+  P S   FK+   +  K+ + +   I+ DHYI   D  +     I RDF  E ++K F+D KD+          G+ H  + ++G   P +V++G DSHTC
Sbjct:    4 TITEKIFSEHVQHAVYA-GQIVETKIDMVIGNDITTPISIRAFKESGAK--KLANPDGFAIVMDHYIPAKDIASANQAKISRDFAYEHDLKNFFDEKDM----------GIEHALMPEKGLVVPGDVIIGADSHTC 126          
BLAST of EY728716 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC1 (3-isopropylmalate dehydratase large subunit OS=Campylobacter concisus (strain 13826) GN=leuC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 41/136 (30.15%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  366 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPXEVLLGTDSHTC 773
            T+TEKIF+    K ++S G+ +   +D+++ +D+  P S   F++   +  K+ + +   I+ DHYI T D  +     I R+F  + ++K ++D KD+          G+ H  L ++G   P +V++G DSHTC
Sbjct:    4 TITEKIFSDHVGK-EVSAGEIIESKIDMIIGNDITTPISIKQFERSGAK--KLANPDGFAIVMDHYIPTKDILSANQAKISREFAYKHDLKNYFDEKDM----------GIEHAILPEKGLVIPGDVIIGADSHTC 126          
The following BLAST results are available for this feature:
BLAST of EY728716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LEUC_WOLSU3.384e-1130.153-isopropylmalate dehydratase large subunit OS=Wol... [more]
LEUC_SULSO3.384e-1134.063-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_NITSB4.419e-1130.153-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC1_METAC4.419e-1131.623-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_CAMFF5.772e-1130.883-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_CAMC17.538e-1130.153-isopropylmalate dehydratase large subunit OS=Cam... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728716 ID=EY728716; Name=EY728716; organism=Citrus sinensis; type=EST; length=905bp
CACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGCC
GCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATC
TTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGC
AAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTC
ATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACA
ATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGT
CGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCG
GTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGA
GAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCT
TGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAA
GAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTAT
ACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGG
ATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGAT
ATTAAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATG
TCATATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGNAGAGGTCTTGC
TAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCANTTTGCC
ACTGGCATTGGCACACTGATGCAGGTTTATATTGGGCCAGGGAAAGTCTG
CTCAAGGTGCCCCACTCTGAAATTGTATTGGATGTGAATGCTGATAATTG
GCTGC
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