EY728235

Overview
NameEY728235
Unique NameEY728235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728235 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.051e-37
Identity = 72/171 (42.11%), Postives = 107/171 (62.57%), Query Frame = 3
Query:   66 SKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAP 572
            +K++ L +GGTG+IG+FI +AS+  G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    P
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPP 180          

HSP 2 Score: 45.4394 bits (106), Expect = 1.051e-37
Identity = 30/77 (38.96%), Postives = 38/77 (49.35%), Query Frame = 1
Query:  556 PGPLPPPRDKVASLGDGNPKAVYNKGDDIWDLYYQGGDDPRTLKNPLH*TP-WEIYSFMTLCR-WGKENWQTLQRGT 780
            P  +PPP D+    GDGN KA +  G+DI     +  DD RTL   +H  P    YS   L   W K+  +TL R T
Sbjct:  175 PSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFT 251          
The following BLAST results are available for this feature:
BLAST of EY728235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.051e-3742.11Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728235 ID=EY728235; Name=EY728235; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGGGAAAAAAAGGAAAGAATCCCCGAAATTGAACTGAACAA
GTCTCGGTAATGGCGTCGAAAAGCAAGATTCTATTCATCGGTGGGACAGG
GTACATCGGCAAATTCATCGTCGAAGCGAGCGTGAAAGCCGGCCACCCGA
CGTTCGTGCTCGTGAGAGAATCCACACTCTCCGCTCCTTCCAAATCTCAG
CTCCTCGATCACTTCAAAAAACTCGGCGTCAATCTCGTCATCGGAGATGT
GTTGAATCACGAGAGCTTGGTGAAGGCGATAAAACAAGTGGACGTGGTGA
TATCAACGGTCGGTCACACTTTATTAGGTGATCAGGTCAAGATTATTGCG
GCCATTAAAGAAGCTGGTAACATTAAGAGATTCTTCCCTTCAGAATTTGG
GAATGATGTTGATCGAGTCCATGCCGTTGAGCCAGCAAAATCAGCATTTG
CCACAAAGGCGAAAATCCGCCGAGCCGTTGAGGCTGAAGGGATTCCGTAT
ACTTATGTAGCGTCGAATTTCTTTGCTGCTTACTTCCTTCCCAATTTGTC
GCAGCCCGGGGCCACTGCCCCCACCTAGGGATAAAGTTGCCTCCTTAGGC
GATGGAAATCCTAAAGCTGTTTATAACAAGGGAGATGATATTTGGGACCT
ATACTATCAAGGGGGTGATGATCCCAGAACCTTAAAAAATCCCTTACATT
AAACCCCCTGGGAAATTTACTCATTCATGACTTTGTGTCGTTGGGGGAAA
GAAAATTGGCAAACCCTTCAAAGGGGGACCTTCCGGAGGAGCAGTCCTAA
AAATATTCAAAAGCTGGCCCTCCGTTATGTGATTTTTCATTCCCACTCCG
CTTCGGAAGGAAAACAACCACTTCAAATTGACCATCTTTGGAGTTAACCT
CCCGTTTTTCCCAAGTAATGCCCTC
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