FK826727

Overview
NameFK826727
Unique NameFK826727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12935 contig Csv1_Contig12935:394..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: HAK10_ORYSJ (Potassium transporter 10 OS=Oryza sativa subsp. japonica GN=HAK10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  184 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVR 351
            +P+  V  EERFLV RIGPK + ++RC+ RYGY D+HK D+ FEKEL  S+  F+R
Sbjct:  602 VPIPHVSPEERFLVGRIGPKEYRIYRCIVRYGYHDVHKDDQEFEKELVCSVAEFIR 657          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.077e-12
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  148 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEAMMEGCSDSD 351
            +P+  VP++ER+L+ RIGPK + M+RC+ R GYKD++K  ++FE EL  S+  F++LE+   G S++D
Sbjct:  555 VPIPYVPQKERYLIGRIGPKTYRMYRCIIRAGYKDVNKDGDDFEDELVMSIAEFIQLESEGYGGSNTD 622          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: POT13_ARATH (Potassium transporter 13 OS=Arabidopsis thaliana GN=POT13 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = -2
Query:  148 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKD-ENFEKELFDSLFLFVRLEAMMEGCSDSD 351
            +PV +VP+ ERFL +R+ P+++H+FRCVARYGYKD+ K+  + FE+ L +SL  F+R EA  E   +SD
Sbjct:  648 VPVPSVPQTERFLFRRVCPRSYHLFRCVARYGYKDVRKESHQAFEQILIESLEKFIRKEA-QERALESD 715          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  151 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEAMMEGCSDS 351
            +PV  V   ER+LV R+GP     +RC+ RYGY+D+H+  ++FE EL +SL  F++L+A+   CSD+
Sbjct:  568 VPVPHVLPAERYLVGRVGPAGHRSYRCIVRYGYRDVHQDVDSFEAELVESLATFIKLDALYHRCSDA 634          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: HAK23_ORYSJ (Potassium transporter 23 OS=Oryza sativa subsp. japonica GN=HAK23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.854e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = -2
Query:  175 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDEN-FEKELFDSLFLFVRLEA 351
            +PV  VP EERFL +RIG K++HMFRCVARYGYKD+ K++   FE+ L ++L  F+R E+
Sbjct:  675 VPVPYVPFEERFLFRRIGQKDYHMFRCVARYGYKDVRKEEHGFFEQLLVETLEKFLRKES 734          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = -2
Query:  175 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEA 351
            +PV  V  +ERFLV RIGPK F ++RC+ R+GY+D+HK D  FE +L  S+  F+R EA
Sbjct:  572 VPVPHVRPQERFLVGRIGPKEFRIYRCIVRFGYRDVHKDDFEFEGDLVCSIAEFIRTEA 630          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = -2
Query:  118 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEAMMEGCSDSDEYSLYGQQTL 351
            +PV  V  EERFL+ R+ PK + M+RC+ RYGYKD+ ++D +FE +L  S+  F+++EA     S S+  S  G+  +
Sbjct:  569 VPVPHVSPEERFLIGRVCPKPYRMYRCIVRYGYKDIQREDGDFENQLVQSIAEFIQMEASDLQSSASESQSNDGRMAV 646          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: POT7_ARATH (Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  148 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKK-DENFEKELFDSLFLFVRLEAM-----MEGCSDSD 351
            +PV  VP+ ERFL +R+  K++H+FRC+ARYGYKD  K+  + FE+ L +SL  F+R EA       +G  DSD
Sbjct:  647 VPVPVVPQNERFLFRRVCTKSYHLFRCIARYGYKDARKETHQAFEQLLIESLEKFIRREAQERSLESDGNDDSD 720          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = -2
Query:  142 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEAMMEGCSDSDEY 351
            +PV  V  +ER+LV RIGP+ + M+RC+ RYGYKD+ + D+NFE  L  ++  F+ +EA  E  S S  Y
Sbjct:  567 VPVPYVSPDERYLVGRIGPRAYRMYRCIVRYGYKDVQRDDDNFENMLVMNIGKFIMMEA--EDASSSASY 634          
BLAST of FK826727 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.579e-11
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = -2
Query:  145 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDENFEKELFDSLFLFVRLEA-MMEGCSDSDE 351
            +PV  V +EER LV RIGP+ F M+RCV R+GYKD+  +D +FE +L   +  FV++EA   + CS SD+
Sbjct:  583 VPVPHVRDEERHLVGRIGPREFRMYRCVVRHGYKDVLAEDTDFENDLVLRIAEFVQMEADFDQRCSISDD 652          
The following BLAST results are available for this feature:
BLAST of FK826727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
HAK10_ORYSJ2.356e-1255.36Potassium transporter 10 OS=Oryza sativa subsp. ja... [more]
POT3_ARATH3.077e-1245.59Potassium transporter 3 OS=Arabidopsis thaliana GN... [more]
POT13_ARATH4.018e-1250.72Potassium transporter 13 OS=Arabidopsis thaliana G... [more]
HAK9_ORYSJ4.018e-1244.78Probable potassium transporter 9 OS=Oryza sativa s... [more]
HAK23_ORYSJ6.854e-1256.67Potassium transporter 23 OS=Oryza sativa subsp. ja... [more]
POT6_ARATH1.527e-1152.54Potassium transporter 6 OS=Arabidopsis thaliana GN... [more]
POT4_ARATH1.527e-1141.03Potassium transporter 4 OS=Arabidopsis thaliana GN... [more]
POT7_ARATH1.994e-1147.30Potassium transporter 7 OS=Arabidopsis thaliana GN... [more]
HAK2_ORYSJ3.402e-1145.71Probable potassium transporter 2 OS=Oryza sativa s... [more]
HAK3_ORYSJ7.579e-1148.57Probable potassium transporter 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionclone502 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 502, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826727 ID=FK826727; Name=FK826727; organism=Citrus sinensis; type=EST; length=352bp
ACTATTTACATGCAACGGCGATTTCACAGGCACAATCGAGTCGACGGATG
ACATTGTTAGGTCTTGATTTGAGGAAGTTGAGTTTCCATTATTATTTAGC
AGGCCATCCGTTGACTGTAGAGTTTGCTGGCCATACAAACTATATTCATC
TGAATCAGAACAACCCTCCATCATGGCTTCAAGCCGGACAAACAAGAAGA
GACTATCAAACAGCTCTTTCTCAAAATTCTCATCTTTCTTATGGAGGTCC
TTATAGCCATACCTTGCTACGCAACGGAACATATGGAAATTCTTGGGTCC
TATCCGCTTTACAAGGAACCTTTCTTCTTCGGGGACTGTGTAAACAGGTA
GG
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