FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFTIYPSPQVSTAVVE YNS+LSTHSLLEHTDVAV+LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFTIYPSPQVSTAVVE YNS+LSTHSLLEHTDVAV+LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFTIYPSPQ+STAVVE YNSVLSTHSLLEHTDVAV+LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.800e-41
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFTIYPSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVSTAVVE YNSVLSTHSLLEHTDV+V+LDNEA+YDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA_PRUDU1.055e-4182.18Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA4_GOSHI1.055e-4182.18Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI1.055e-4182.18Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_PEA1.055e-4182.18Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA_TETTH1.378e-4182.18Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY1.378e-4182.18Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_EUGGR1.378e-4182.18Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA2_STYLE1.800e-4181.19Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_OXYGR2.351e-4180.20Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_CHLVU2.351e-4180.20Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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