FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.840e-41
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV+VLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEF+TNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFRTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.934e-41
Identity = 85/102 (83.33%), Postives = 87/102 (85.29%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRS-LDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFTIYPSPQVSTAVVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRS LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:   74 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLLDIERPTYTNLNRLVSQIISSLTTSLRFDGALNVDVTEFQTNL 175          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.934e-41
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQV+TAVVE YNSVLSTH+LLEHTDVAV+LDNEAIYDICRRSLDI+RPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.934e-41
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQV+TAVVE YNSVLSTH+LLEHTDVAV+LDNEAIYDICRRSLDI+RPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL+IERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV++LLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.524e-40
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL FTIYPSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLTFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.524e-40
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.990e-40
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL FT+YPSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.599e-40
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYG+KSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV++LLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGRKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA1_GOSHI6.840e-4180.20Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_ANEPH8.934e-4183.33Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA1_NAEGR8.934e-4179.21Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR8.934e-4179.21Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA6_ARATH1.167e-4079.21Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_HORVU1.167e-4079.21Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA_EUPOC1.524e-4080.20Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA2_ARATH1.524e-4079.21Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA_EUPVA1.990e-4080.20Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA_WHEAT2.599e-4078.22Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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