FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.290e-39
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYGKKSKLGFT+YPSPQVSTAVVE YNSVL+THSLLEHTDVAV+LDNEAIY+IC+RSL+IERPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 LDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLATHSLLEHTDVAVVLDNEAIYEICQRSLNIERPTYTNLNRLIAQVISSITASLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.753e-39
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLG+T+YPSPQVSTAVVE YNSVLSTHSLLEHTDVA +LDNEAIYD+ RR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRRNLDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.753e-39
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            V+YGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV++LLDNEAIYDICRRSLDIERP Y+NLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VEYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPNYSNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.402e-39
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F  +PSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.402e-39
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F  +PSPQVSTAVVE YNSVLSTHSLLEHTDVA++LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.402e-39
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F  +PSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.362e-39
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F +YPSPQVSTAVVE YNSVLSTHSLLEHTDVA +LDNEAIYDIC+R+LDI+RPTYTNLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFMLDNEAIYDICKRALDIDRPTYTNLNRLVAQVISSLTTSLRFDGALNVDITEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.863e-38
Identity = 77/101 (76.24%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLG+T+YPSPQVSTAVVE YNSVLSTHSLLEHTDVA +LDNEAIYD+ R +LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRANLDIERPTYTNLNRLIGQVVSALTASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.177e-38
Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F  +PSPQVSTAVVE YNSVLSTHSLLEHTDVA++LDNEAIYDIC+++LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.245e-38
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F +YPSPQVSTAVVE YNSVLSTH LLEHTDVA +LDNEAIYD+C+RSLDIERP+Y NLNR             RFDGA+NVDITEFQTNL
Sbjct:  159 VDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKRSLDIERPSYANLNRLVAQVISSLTTSLRFDGALNVDITEFQTNL 259          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBAN_GUITH1.290e-3978.22Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA_TRYBR3.753e-3977.23Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA3_MAIZE3.753e-3976.24Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA_TOXGO6.402e-3978.22Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_PLAFK6.402e-3977.23Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_NEOCA6.402e-3978.22Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBAD_PHYPO8.362e-3977.23Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA_TRYCR1.863e-3876.24Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_PLAYO3.177e-3875.25Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBAE_PHYPO9.245e-3875.25Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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