FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.974e-36
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA1B_HUMAN2.277e-3671.29Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR2.277e-3671.29Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN2.277e-3671.29Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBA1A_RAT2.277e-3671.29Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PIG2.277e-3671.29Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA1A_PANTR2.277e-3671.29Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1A_MOUSE2.277e-3671.29Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P... [more]
TBA1A_HUMAN2.277e-3671.29Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR2.277e-3671.29Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_XENLA2.974e-3671.29Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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