FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 LDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 LDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 LDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 LDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            DYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  160 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.625e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F IYP+PQV+TAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.653e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP+YTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.653e-36
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F++YP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP+YTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.130e-35
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F +YP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP+YTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  153 VDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 253          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.130e-35
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F+IYP+PQVSTAVVE YNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTY NLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA8_RAT6.625e-3670.30Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE6.625e-3670.30Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN6.625e-3670.30Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN6.625e-3670.30Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA5_CHICK6.625e-3671.00Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA3_HOMAM6.625e-3670.30Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA_NOTVI8.653e-3670.30Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA1_APLCA8.653e-3669.31Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA_ONCKE1.130e-3569.31Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA2_DROME1.130e-3570.30Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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