FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:237..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 5.744e-39
Identity = 72/112 (64.29%), Postives = 90/112 (80.36%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            +R++I+KID           G P  +YDDF ASLP N+CRYA++D+DFVT ENCQKSKIFFIAWSPD SR+R+KM+YA+SKDRF+RELDGI  E+QATDP+E+ L+VIR RA
Sbjct:   27 YRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRA 138          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.744e-39
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            +R++IF+ID           G P E+YDDFTASLP N+CRYAV+DFDF+T ENCQKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM  ++I+ RA
Sbjct:   27 YRFIIFRIDGQQVVVEKL--GNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 9.797e-39
Identity = 70/111 (63.06%), Postives = 90/111 (81.08%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            R++ FKID           G P ++YDDFTAS+P ++CRYAV+DFDFVT ENCQKSKIFFI+WSPD S++R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:   28 RFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.183e-38
Identity = 68/111 (61.26%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            HR++++KI+           G P  +Y+DF ASLP ++CRYA+YDFDFVT+ENCQKSKIFFIAW PDV+++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V++ R
Sbjct:   27 HRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSR 137          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.183e-38
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            HR++++KI+           G P ++Y++F A LP ++CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V R RA
Sbjct:   27 HRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRA 138          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.862e-38
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            R++IF+ID           G P E+YDDFTASLP ++CRYAV+DFDF T+ENCQKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM  ++I+ RA
Sbjct:   17 RFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.294e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            R+++FKID           G  AE Y+DF A+LP ++CRYAVYD DFVT ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L++IR RA
Sbjct:   28 RFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARA 138          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.294e-38
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HR+V++KID           GGP E Y++  A+LP +DCRYAV+DFDFVT +NCQKSKIFFIAWSP  SRIRAK+LYATSK   RR LDG+HYE+QATD SEM  +VIR RA+
Sbjct:   31 HRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRAQ 143          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.294e-38
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HRY++FKI+           GG  ESY D   SLP +DCRYAV+DFDFVT +NC+KSKIFFIAWSP+ S+IRAK+LYATSKD  RR L+GIHYE+QATDP+EM  ++I+DRA+
Sbjct:   31 HRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.413e-37
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            +R++I+KI+           G P ESY+DFTA LP ++CRYAVYDFDF+T EN QKS+IFFIAWSPD +R+R+KM+YA+SKDRF+RELDGI  E+QATDP+EM L+V R RA
Sbjct:   27 YRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF7_ORYSJ5.744e-3964.29Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF7_ARATH5.744e-3966.07Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF6_ORYSJ9.797e-3963.06Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF4_ARATH2.183e-3861.26Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ARATH2.183e-3859.82Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF_BRANA4.862e-3865.77Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF9_ORYSJ8.294e-3865.77Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF5_ORYSJ8.294e-3863.72Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF5_ARATH8.294e-3862.83Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF2_PETHY2.413e-3762.50Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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