FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:237..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.413e-37
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            +R++IF+ID           G P E+YDDFT  LP N+CRYAVYDFDF T+EN QKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM L++I+ RA
Sbjct:   27 YRFIIFRIDGQQVVVEKL--GSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.198e-36
Identity = 69/110 (62.73%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            R+++F+ID           G P + Y DFT SLP N+CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L+++R R
Sbjct:   28 RFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSR 137          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.043e-36
Identity = 67/113 (59.29%), Postives = 85/113 (75.22%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HRYV++K++           G   ESYDD  ASLP++DCRYAV+DFD+VT +NC+ SKIFFI WSP+ SRIR KM+YATSK   RR LDG+HYE+QATDP+EM  + I+DRA+
Sbjct:   18 HRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.014e-35
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            R+++F+ID           G P + Y DFT SLP ++CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L++++ R
Sbjct:   28 RFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSR 137          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.324e-35
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            R +++KI+           G P +SYDDF ASLP +DCRY +YDFDFVT+ENCQKSKIFFIAWSPD +++R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+V + R
Sbjct:   28 RTIVYKIEDKQVIVEKL--GEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.121e-34
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            HRYVIFKID          TG P ESYDDFTASLP +    AVYD DFV+ +NC+KSKIFFI+WSP +S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLEV+R RA
Sbjct:   36 HRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRA 143          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.464e-34
Identity = 62/112 (55.36%), Postives = 88/112 (78.57%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            HR++I+KI+           G P ++++D  ASLP ++CRYA++DFDFV+SE   +S+IFF+AWSPD +R+R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V + RA
Sbjct:   27 HRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRA 138          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.337e-32
Identity = 62/113 (54.87%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HR++ FK+D           G  A SYDDFT SLP+NDCRYA+YDFDFVT+E+ QKS+IF+I WSP  +++++KMLYA+S  +F+  L+GI  E+QATD SE+ L+ I+DRAR
Sbjct:   27 HRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRAR 139          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.857e-30
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HR++ F +D           G    SY+DFT+SLP+ DCR+A+YDFDF+T+E+  KS+IF+I WSPD +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ ++DR +
Sbjct:   27 HRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDRVK 139          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSE-----------NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRD 331
            HR+V+FKID           G     +D+ TASLP + CRYAVYD DF  S+              +SKIFF++WSP  + +R+KM+YA+S + F++ELDG+  ++QATDPSE+ L+V++D
Sbjct:   27 HRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKD 147          
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF12_ARATH2.413e-3765.18Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF1_MAIZE1.198e-3662.73Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF9_ARATH2.043e-3659.29Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF2_MAIZE1.014e-3560.91Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF2_ARATH1.324e-3561.82Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF8_ORYSJ1.121e-3463.39Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_ARATH1.464e-3455.36Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF3_MAIZE2.337e-3254.87Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ2.857e-3048.67Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ4.720e-2543.80Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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