FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:237..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.509e-18
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + YD F   LP+NDC YAVYDF++    N  ++SKI F  WSPD + +R+KM+YA+SKD  RR L+G+  +IQ TD SE+  E + ++
Sbjct:   48 QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEK 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.509e-18
Identity = 42/89 (47.19%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + +D F A LP+ DCR+AVYDF+F +      ++K+ FI WSPD + ++ KM++A+SK+  RR LDGIH EIQATD SE+  + + ++A
Sbjct:   47 KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            +++V+F ++          T    + YD F   LP++DC YAVYDF++ ++    ++SKI F  WSPD + IR+KM+YA+SKD  RR L+G+  +IQ TD SE+  E + ++
Sbjct:   25 YKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEK 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.067e-16
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   77 SYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEM 310
            S+D+FT  LP+N+CRY V D+ +   E  QKSKI F+AW PD + I+ KM+  +SKD  R+   GI  EIQ TD SE+
Sbjct:   49 SFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPD---NDCRYAVYDFDFV-----TSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HRYVIF I               AE YD F   +      +CRY ++DF+++     TSE+ +K K+F ++W PD ++++ KMLY++S D  ++ L G+   IQATD SE   E + ++ R
Sbjct:   24 HRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLR 143          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.896e-14
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.896e-14
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.896e-14
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.091e-13
Identity = 31/89 (34.83%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            ES++D+    P +DCRY VYDF ++ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD +E+   ++ +R +
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEERCK 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTCIAEK 151          
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COFI_KLULA2.509e-1847.73Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_CRYNE2.509e-1847.19Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COFI_ASHGO9.533e-1839.29Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COF1_DICDI3.067e-1650.00Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
CADF_DROME5.784e-1535.54Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
DEST_PIG4.896e-1435.63Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN4.896e-1435.63Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN4.896e-1435.63Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
COF4_DICDI1.091e-1334.83Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_MOUSE1.425e-1335.63Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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