FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:237..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTSIAEK 151
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 292
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
DEST_CHICK1.425e-1335.63Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
DEST_RAT1.861e-1335.63Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
COF1_SHEEP4.145e-1343.84Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_RAT4.145e-1343.84Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_PIG4.145e-1343.84Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA4.145e-1343.84Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN4.145e-1343.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF1_MOUSE5.413e-1343.84Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN5.413e-1343.84Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF2_PIG1.333e-1138.64Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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