FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:237..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 337
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQ 289
            + Y  F   LP NDCRYA+YD  + T E  +K  + F+ W+P+ + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQ 289
            + Y  F   LP NDCRYA+YD  + T E  +K  + F+ W+P+ + +++KM+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  119 RYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVI 325
            RYAVYDF++ + S +  ++KI FIAWSPD + I+ KM+YA+SK+  +R L GI  E+QA D  +++ + I
Sbjct:   65 RYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSI 134          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXT-GGPAESYDDFTASLPDN----DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            H+Y+I++I+                +SY D    + +N    +CRY + D    T E   +++I+FI WSPD+++ + KMLYA+SK+   R+++GI   ++ T     DLE   D  R
Sbjct:   24 HKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT----CDLEDFEDELR 137          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXT-GGPAESYDDFTASLPDN----DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            H+Y+I++I+                +SY D    + +N    +CRY + D    T E   +++I+FI WSPD+++ + KMLYA+SK+   R+++GI   ++ T     DLE   D  R
Sbjct:   24 HKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT----CDLEDFEDELR 137          
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COF2_MOUSE1.333e-1138.64Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN1.333e-1138.64Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN1.333e-1138.64Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF2_CHICK2.274e-1138.64Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1A_XENLA2.970e-1141.67Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF1B_XENLA3.879e-1141.67Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COFI_GIBZE5.067e-1147.14Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
CADF2_PLAFX5.067e-1131.36Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF75.067e-1131.36Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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