FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.392e-35
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK ASYD IK AIK  SEG++KGILGYTEDDVVSTDF+ D+RSSIFDAKAGIALS  FVKLV+WYDNEWGYS
Sbjct:  240 PTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYS 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.430e-35
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR+EK ASY+EIK AIKA SEG LKGI+GY E+D+VSTDF GD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.786e-35
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR+EK ASY++IK AIKA SEG LKGI+GY E+D+VSTDF+GD+RSSIFDAKAGIAL+  FVKLVSWYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.557e-35
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+VSTD  GDNRSSIFDAKAGI+L+K FVKLVSWYDNEWGYS
Sbjct:  235 PTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.557e-35
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTV+L K+ +YDEIKAAIKA SEGKLKGILGYTED VVSTDF+GDN SSIFDA AGI LS +FVKLVSWYDNE+GYS
Sbjct:  233 PTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.683e-34
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVRL K A+Y++IKAAIK ESEG LKGILGY ++D+VSTDF GD+RSSIFDAKAGIAL+  FVKLVSWYDNEWGYS
Sbjct:  206 PTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYS 291          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.199e-34
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+V+TD  GDNRSSIFDAKAGI+L+K FVKLVSWYDNEWGYS
Sbjct:  235 PTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.091e-33
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRL K+ SYD+IKAA+K  SEG L+G LGYTEDDVVS+DF+GDNRSSIFDAKAGI LSK FVK+VSWYDNE+GYS
Sbjct:  232 PTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYS 317          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVVDLTVRLEK ASY++IKAAIK  SEG LKGILGYTED+VVSTDF+GD+ SSIFDAKAGI+L+  FVKL+SWYDNE+GYS
Sbjct:  234 PNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.431e-33
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRL K+ SYD+IKAA+KA SEG L+G+LGYTEDDVVS DF GDNRSSIFDAKAGI LSK FVK+VSWYDNE+GYS
Sbjct:  232 PTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYS 317          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3PC_PHYPA3.392e-3583.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE4.430e-3581.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE5.786e-3581.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCHE7.557e-3581.40Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_ASHGO7.557e-3583.72Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PC_HORVU1.683e-3481.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CURLU2.199e-3480.23Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_HOMAM1.091e-3380.23Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_RHIMI1.861e-3379.07Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PANVR2.431e-3380.23Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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