FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.585e-32
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL   ASYDEIKAAIK+ SE ++KGILGYTE  VVS+DF+GD+ SSIFDA+AGIAL+ +FVKLVSWYDNEWGYS
Sbjct:  233 PTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 4.585e-32
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYS
Sbjct:  234 PTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.988e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTV+L KDA+YDEIKAA+K  +EG LKG++GYTED VVS+DF+ DNRSSIFDA+AGI LS  FVKL++WYDNE+GYS
Sbjct:  235 PTVDVSVVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.988e-32
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT R+EK ASYDEIK AIK  +EG LKG+L YTEDDVVSTD +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS
Sbjct:  236 PTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.820e-32
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVR EK  +YD+IK A+K  SE +LKGILGYTEDD+VSTD  GD RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS
Sbjct:  235 PTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 7.820e-32
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTV+LEK+A+YD+IK A+KA +EG +KG+LGYTED VVS+DF+GD  +SIFDA AGI LS +FVKL+SWYDNE+GYS
Sbjct:  234 PTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.820e-32
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR  KD +YDEIKAAIK  SEG++KGIL YTED VVSTDF+GD  SSIFDA AGI LS  FVKLVSWYDNE+G+S
Sbjct:  234 PTVDVSVVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.021e-31
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK ASYDEIKA IK  SE + LKGILGYTED VVSTDFVGD  SSIFDAKAGI LS  FVKL+SWYDNE+GYS
Sbjct:  236 PTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.021e-31
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK A+Y+EIKA IK  SE +LKGILGYT D VVSTDFVGD +SSIFDA AGIAL+ +FVKLVSWYDNE+GYS
Sbjct:  235 PTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.334e-31
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDL VRLEK ASYD+IK  IK  SEG+LKGILGYTED+VVSTDF+G   SS+FDAKAGI L+ +FVKL+SWYDNE+GYS
Sbjct:  235 PTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYS 320          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_PHYIN4.585e-3276.74Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P2_YEAST4.585e-3275.58Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_PICCI5.988e-3275.58Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COLGL5.988e-3275.58Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_EMENI7.820e-3275.58Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P1_YEAST7.820e-3273.26Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_CANGA7.820e-3277.91Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P3_RHIRA1.021e-3181.61Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P2_RHIRA1.021e-3179.07Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_CRYCU1.334e-3175.58Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
back to top