FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.620e-31
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVRL+K A+Y+EI  AIKA S G+LKGILGYTED VVSTDF+G + SSIFD KAGI LS  FVKL+SWYDNE+GYS
Sbjct:  235 PTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.620e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.646e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.129e-30
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT R EK  +Y++IK  IKA SE G+LKGILGYTEDD+VSTD +GD  SSIFDAKAGIAL++ F+KLVSWYDNEWGYS
Sbjct:  236 PTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.475e-30
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR++  ASY++IKA +KA SE  +LKGILGYT++DVVSTDF+GD  SSIFDAKAGI L+  FVKL+SWYDNE+GYS
Sbjct:  235 PTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYS 321          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_DEBHA6.620e-3176.74Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P1_ESCF36.620e-3174.42Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_SHIFL8.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY8.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI8.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI8.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL68.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO578.646e-3174.42Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_ASPOR1.129e-3073.56Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_YARLI1.475e-3073.56Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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