EY684746

Overview
NameEY684746
Unique NameEY684746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGF 341
            D++L  V  + P + T+VEQE+N N+  F+ R  E+  YY  LFDS+E   +    D+V  E  L +++ N VAC+G DRVER E   +WR R   AGF
Sbjct:  382 DKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEG--VPSGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGF 478          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE------------STVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGF 341
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E            S      +D+V  E  L R++ N VACEG +R ER E  G+WR+R+  +GF
Sbjct:  462 EKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAGAGSGQSTDASPAAAGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRSRLGGSGF 572          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.490e-14
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE---------------STVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFE 344
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E               +      +D+V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE
Sbjct:  450 EKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGGPSEVSSGGAAPAAAAGTDQVMSEVYLGRQICNVVACEGTERTERHETLGQWRNRLGNAGFE 564          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   15 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRNRLRWGGKRK 413
            DE+V+  +PRD +L+ ++ + P V        + N   F+ R  E   +Y +LFD  ++ + R+   RV  E E   R++ N VACEG +RVER E + +W+AR   AGF   P+ + + + ++  +  G K K
Sbjct:  532 DETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPK 665          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE----------------STVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFE 344
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E                +      +D+V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE
Sbjct:  454 EKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGGSSGGGPSEVSSGAAAAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFE 569          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.547e-14
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDH------------SDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFE 344
            +++L  V  + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E                   +D+V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE
Sbjct:  460 EKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFE 571          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   63 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGF 341
            VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E        D+V  E  L +++ N VACEG DRVER E   +W  R   +GF
Sbjct:  427 VKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA--PSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGF 517          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGF 341
            +++L  VK + P + T+VEQE++ N   F+ R  E+  YY  LFDS+E   +    D+V  E  L +++ N VACEG DRVER E   +W  R   +GF
Sbjct:  427 EKVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEG--VPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGSSGF 523          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAG 338
            +++L  VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E   + +  D+V  E  L +++ N VACEG DRVER E   +W  R   +G
Sbjct:  434 EKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEG--VPNSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSG 529          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 41/130 (31.54%), Postives = 73/130 (56.15%), Query Frame = 3
Query:   15 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLR--DHSDRVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRNRLR 395
            DE+VS ++PRD +L+  + ++P +    E     N+  FM R  EA  +Y +LFD  ++T+    ++ +R  +E E L R   + ++CEG +R  R E + +WR R+  AGF+   +S+ I +  +  +R
Sbjct:  437 DETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVR 566          
The following BLAST results are available for this feature:
BLAST of EY684746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GAI_ARATH1.907e-1442.42DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
DWRF8_MAIZE1.907e-1437.84DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SLN1_HORVU2.490e-1437.39DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
SCL33_ARATH3.252e-1432.84Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
RHT1_WHEAT4.247e-1437.07DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
SLR1_ORYSJ5.547e-1438.39DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
RGA1_BRACM4.696e-1343.01DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGA2_BRACM6.133e-1340.40DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
RGA_ARATH8.010e-1340.82DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
SCL11_ARATH5.192e-1231.54Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684746 ID=EY684746; Name=EY684746; organism=Citrus sinensis; type=EST; length=904bp
CGGACGCGTGGGCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGACGAG
CTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGGTGGA
GCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAACGAGG
CGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGTGCTG
AGAGACCACTCGGACCGAGTCAAAGTCGAGGAAGGGCTGAGTCGTAAATT
GGCTAACTCGGTTGCTTGTGAAGGCAGGGACCGTGTGGAGAGATGCGAGG
TGTTTGGCAAGTGGCGAGCCCGCATGAGGATGGCTGGGTTCGAGTTGAAG
CCAATGAGTCAAATCATTGCCGAGTCAATGCGGAATCGACTGAGGTGGGG
GGGGAAGCGAAAGACCCCCAGGTTCAGCCTCCAAACCAAAACCGACCCCT
TGGCTCTAGCTAGAAAGCAAAAACCCTCACGACACTGACCGGACCACAAG
AAAATAGACCCGCAAGAGCAAAAAGAATGACCTACGCGAGCCGGGGTGGC
AGCACGGACGCGAGTGCACAACCACGACACCACCGGAACGCCACGGACAC
AGAAAGGGACCCCGGAAAAAAACAACACGCGACACAACCCCACGGAGAGA
AAGCGAGAGGGCGGAAAAAACACAGACCCCCTACCAGAGCCACAAACAAA
GGAAACCACCCACACACAAAGATCACGAGGCACAGACACGCAGGCGGCAG
CGTGCAGAAACACGGAGCTTGAGACAACAAGAGAGAGCAGAAAAACGGGT
GAAGAGAAACAGAAGCGGCCAATAAACAACAAAAAAAAGAACGAAAGCAA
CAGATCAGAGAAAGGACGCAACGAGACGCAACAAAGGGGGAGAAGAAGTA
ACAC
back to top