EY684746

Overview
NameEY684746
Unique NameEY684746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   15 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAE 374
            DE+VS  +PRD  L+  + ++P +    E     N+  F+ R  EA  +  +LFD  E+T+  D + R  VE E + R   + +ACEG +R  R E + +W+ R+  AGF    +S+ I +
Sbjct:  420 DETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVK 540          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 43/130 (33.08%), Postives = 63/130 (48.46%), Query Frame = 3
Query:   48 ELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGL-SRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRNRLRWGGKRKTPRFSLQ 434
            + L  ++  +P  + L EQE   N+     RV  +  YY A+FD+I + +  D   RVKVEE L  R++ N VACEG  R ER   F  WR  +   GF    +S+      +  LR  G      F+++
Sbjct:  493 DFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVE 622          
BLAST of EY684746 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 52/147 (35.37%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   45 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGL-SRKLANSVACE--GRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRNRLRWGGKRKTPRFSLQTKTDPLALARKQKP 476
            D  LR  K L+P VVTL E E + N   F  RV  A  +Y A+F+S+E  + RD  +RV+VE  L  R+++  +  E  G  R ER E   +WR  M  AGFE   +S   A S    L W          +++K   ++LA    P
Sbjct:  432 DTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHR-ERMEEKEQWRVLMENAGFESVKLSN-YAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLP 576          
The following BLAST results are available for this feature:
BLAST of EY684746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SCL30_ARATH8.856e-1233.06Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL28_ARATH5.741e-1133.08Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCL4_ARATH7.497e-1135.37Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684746 ID=EY684746; Name=EY684746; organism=Citrus sinensis; type=EST; length=904bp
CGGACGCGTGGGCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGACGAG
CTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGGTGGA
GCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAACGAGG
CGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGTGCTG
AGAGACCACTCGGACCGAGTCAAAGTCGAGGAAGGGCTGAGTCGTAAATT
GGCTAACTCGGTTGCTTGTGAAGGCAGGGACCGTGTGGAGAGATGCGAGG
TGTTTGGCAAGTGGCGAGCCCGCATGAGGATGGCTGGGTTCGAGTTGAAG
CCAATGAGTCAAATCATTGCCGAGTCAATGCGGAATCGACTGAGGTGGGG
GGGGAAGCGAAAGACCCCCAGGTTCAGCCTCCAAACCAAAACCGACCCCT
TGGCTCTAGCTAGAAAGCAAAAACCCTCACGACACTGACCGGACCACAAG
AAAATAGACCCGCAAGAGCAAAAAGAATGACCTACGCGAGCCGGGGTGGC
AGCACGGACGCGAGTGCACAACCACGACACCACCGGAACGCCACGGACAC
AGAAAGGGACCCCGGAAAAAAACAACACGCGACACAACCCCACGGAGAGA
AAGCGAGAGGGCGGAAAAAACACAGACCCCCTACCAGAGCCACAAACAAA
GGAAACCACCCACACACAAAGATCACGAGGCACAGACACGCAGGCGGCAG
CGTGCAGAAACACGGAGCTTGAGACAACAAGAGAGAGCAGAAAAACGGGT
GAAGAGAAACAGAAGCGGCCAATAAACAACAAAAAAAAGAACGAAAGCAA
CAGATCAGAGAAAGGACGCAACGAGACGCAACAAAGGGGGAGAAGAAGTA
ACAC
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