EY684529

Overview
NameEY684529
Unique NameEY684529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3542 contig Csv1_Contig3542:432..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 3 
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 254
            + ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVE+ FF++ARDI     +++ D++S      +KI +
Sbjct:  114 VERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193
[Close]
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 263
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  F+++ARDIK    ++L     +     +KI  PDQ
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
The following BLAST results are available for this feature:
BLAST of EY684529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAB8B_HUMAN6.670e-1141.98Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_BOVIN6.670e-1144.05Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684529 ID=EY684529; Name=EY684529; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGCCCACGCGTTCGCTCAACAAGGTTTTGGTAGGAAACAAA
GCTGACATGGACGAAAGCAAAAGGGCTGTGCCTACCTCAAAGGGTCAAGC
ACTTGCTGATGAGTATGGTATAAAATTTTTTGAAACCAGTGCAAAGACAA
ATCTAAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGGGATATTAAACAA
AGGCTTGCTGATACTGACTCAAGATCTGAGCCCTCAACAATCAAGATTAA
TCAACCAGACCAGGCCGGGGGGGTTGGTCAAGCCGCCCAAAAATCGGCTT
GCTGTGGTGGTACTTAATAACCCATAACTTCTGAGGCACGTCCAGGTGTA
ACTCTTGGAAAGGGAAAAGGAAAAAAGAAAAAAAAAAAAAAAGAAACAAA
GAAAAGAAAAAACTAATTGTGATGACTGTGATGGATGCTTGTAATTTTTC
TTGTCATTCTTTTGAATCTTGTTTTAGCGTGTGAAATGTAGTTTTTAATT
ATTGAGAATTTCCATTGTGGCAAACAGCTCCTTCTATCTTGTGACTGACA
TATTTTTCCTTTTTTACCCATTTTCTTTTTCTGAAANNNNNNNCANNNCC
NGNNNNCNNNGCNGNNNGAGNAGAGAGAAGACGCCGGGGGAGGAATTTTG
GCAAAGAGACAAAACGCGGGGCAAGCAAGAGAGAGAAGTAAGAACGAAGA
AGGAAGCGGGGGTAGTGATAGAAAGGAAGCGAGACTTTATGAGGGGGCCC
TAAAAAAGAACAAACTTAAGACGCGGGGGTGAAAACAAAAGCCTTCTAAA
AGGCGCCAAAATAATATCGGCGGCGCCCTAATCACCA
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